View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_23 (Length: 386)
Name: NF20367_low_23
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 24879958 - 24880326
Alignment:
| Q |
1 |
ctactaaataattcaaagttgtaaacaaatacagtctttgagagttgagactatagtaacacactatatatggataaacacattatagtaacaaatatag |
100 |
Q |
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| T |
24879958 |
ctactaaataattcaaagttgtaaacaaatacagtctttgagagttgagactatagtaacacactatatatcgataaacacattatagtaacaaatatag |
24880057 |
T |
|
| Q |
101 |
tgtttgagttggggttatttgatctatttgcttaggatcagatgctttccattttactgatcctaagatatgatgtaataacttttttggttttactctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24880058 |
tgtttgagttggggttatttgatctatttgcttaggatcagatgctttccattttactgatcctaagatatgatgtaataacttttttggttttactctt |
24880157 |
T |
|
| Q |
201 |
gagcatatcttatgcttaagttgtannnnnnnnnnnnatgttgattaatgaaatctttttagcttacaaaaagcaatagatatgagattatttttcttgt |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
24880158 |
gagcatatcttatgcttaagttgtatttttcttttttatgttgattaatgaaatctttttagcttacaaaaagcaatagatatgtga-aatttttcttgt |
24880256 |
T |
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| Q |
301 |
catcactgttattcttcatcttacttgcattgcatgtaatatagcacagtgggaccaggagtggatcctc |
370 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24880257 |
catcactattactcttcatcttacttgcattgcatgtaatatagcacagtgggacctggagtggatcctc |
24880326 |
T |
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