View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_24 (Length: 382)
Name: NF20367_low_24
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 374
Target Start/End: Complemental strand, 7277821 - 7277452
Alignment:
| Q |
6 |
aaaaagaccaaaaaagagattcaatttgagatataatacttaaaagagtcttgaagaaggaaagaaaataacccaattaagaagacaatacaactttaag |
105 |
Q |
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| T |
7277821 |
aaaaatacctaaaaaggggttcaatttgagatataatacttgaaagagccttgaagaaggaaagaaaataatccaattaagaagacaatacaactttaag |
7277722 |
T |
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| Q |
106 |
aagaacaacacgaccactcattgacatattacaacatttcataccaattagactattatgaatcctttcaataaacggaagccaaaatgaaatatgaaat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | ||||| ||||||||||||||| |
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| T |
7277721 |
aagaacaacacgaccactcattgacatattacaacatttcataccaattagactattatcaatcatttcaataaaagagagccagaatgaaatatgaaat |
7277622 |
T |
|
| Q |
206 |
aacctcatattgggagaccaaaatatttaaatacaactttacaaatttgggagttaagctgacatcccc-gcgagaaaacttttatgaaagttcgctttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
7277621 |
aacctcatattgggagaccaaaatatttaaatacaactttacaaatttgggagttaagctgatatccccagcgagaaaacttttatgaaagttgactttt |
7277522 |
T |
|
| Q |
305 |
aaattttacatcaattcaaatagcaacaaaatagccttaagagttcttactcctgccctaatctcttctc |
374 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
7277521 |
aaattctacatcaattcaaatagcaacaaaatagccttaagagttcttactactgccctaatttcttctc |
7277452 |
T |
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