View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20367_low_26 (Length: 379)
Name: NF20367_low_26
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 32385560 - 32385197
Alignment:
| Q |
1 |
ataatataaacaacactctttgttgaactatttcatttcatcaccatcatcttggagtaagaaactataattgcaaggaatatgatattaggaagnnnnn |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32385560 |
ataatataaacgatactctttgttgaactatttcatttcatcatcatcgttttcgagtaagaaactataattgcaaggaatatgatattaggaagaaaaa |
32385461 |
T |
|
| Q |
101 |
nn-tacaatttttggatgctagcacaataactaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttttgctagcacaataactc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32385460 |
aaatacaatttttggatgctagcacaataactaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttttgctagcacaataactc |
32385361 |
T |
|
| Q |
200 |
gttcttctctactgatcattttgtactctctcgagtcgtacacatagaatcaacgaaacatttcatcacattcacatccggtattttcgcacttgtgaaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
32385360 |
gttcttctctactgatcattttgtactctctcgagtcgtacacatagaatcaacgaaacatttcatcacattcacatccggaatttttgcacttgtgaac |
32385261 |
T |
|
| Q |
300 |
agaaaaaaccggac---attcttccatacaatcttcgtcttctacacattcaagatgtcctata |
360 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32385260 |
agaaaaaatcggacaagattcttccatacaatcttcgtcttctacacattcaagatgtcctata |
32385197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 32393069 - 32392916
Alignment:
| Q |
29 |
tatttcatttcatcaccatcatcttggagtaagaaactataattgcaaggaatatgatattaggaagnnnnnnntacaatttttggatgctagcacaata |
128 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| |
|
|
| T |
32393069 |
tatttcatttcttcaccatcatcttagagtaagaaactataattgcaaggaatatgatattaggacaaaaaaaatacaacttttggacgctaacacaata |
32392970 |
T |
|
| Q |
129 |
actaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttt |
182 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||| ||||||| | ||||||| |
|
|
| T |
32392969 |
actaagcaacatctcttgaaatatttcaatttaagacatattgaacggtacttt |
32392916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University