View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_27 (Length: 361)

Name: NF20367_low_27
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_27
NF20367_low_27
[»] chr5 (18 HSPs)
chr5 (1-177)||(10216262-10216438)
chr5 (177-301)||(10216524-10216648)
chr5 (190-327)||(11048419-11048563)
chr5 (1-125)||(10210469-10210593)
chr5 (29-177)||(10108510-10108665)
chr5 (178-327)||(10746768-10746921)
chr5 (178-338)||(10612014-10612174)
chr5 (204-339)||(10605055-10605190)
chr5 (225-339)||(10740487-10740605)
chr5 (225-339)||(10762921-10763039)
chr5 (224-335)||(10581303-10581414)
chr5 (179-323)||(10582307-10582450)
chr5 (30-161)||(9683111-9683233)
chr5 (273-324)||(10559220-10559271)
chr5 (269-322)||(10659921-10659974)
chr5 (137-177)||(10210615-10210655)
chr5 (276-324)||(10588273-10588321)
chr5 (276-324)||(10652045-10652093)
[»] chr6 (5 HSPs)
chr6 (238-339)||(12899873-12899974)
chr6 (238-339)||(12958381-12958482)
chr6 (238-339)||(12907493-12907594)
chr6 (246-339)||(12948947-12949040)
chr6 (246-339)||(12932582-12932675)
[»] scaffold0692 (1 HSPs)
scaffold0692 (238-332)||(7603-7697)
[»] chr2 (1 HSPs)
chr2 (246-339)||(17923216-17923309)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 10216262 - 10216438
Alignment:
Q  1 gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatcttcaacatttcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10216262 gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatcttcaacatttcac 10216361  T
Q  101 tggaaaaatcattaggagacaaagatggtgatgatagaatggtgaaggatgggttcaggatacgcagataaataaca 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10216362 tggaaaaatcattaggagacaaagatggtgatgatagaatggtgaaggatgggttcaggataagcagataaataaca 10216438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 177 - 301
Target Start/End: Original strand, 10216524 - 10216648
Alignment:
Q  177 acaaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  10216524 acaaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatttaagcatttagaacat 10216623  T
Q  277 acctggaggagtgtagccaacggtt 301  Q
    |||||||||||||||||||||||||    
T  10216624 acctggaggagtgtagccaacggtt 10216648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 190 - 327
Target Start/End: Original strand, 11048419 - 11048563
Alignment:
Q  190 atactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcat-------ttagaacatacctgg 282  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||       |||||||| ||||||    
T  11048419 atactatgtcaatggtaatatgttaagtattcaccaaaacataggagaattcaaagaaacagtggaagatttaagcatttagaaattagaacagacctgg 11048518  T
Q  283 aggagtgtagccaacggttccttttattccaattgtactagtatt 327  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||    
T  11048519 aggagcgtagccaatggttccttttattccaattgtactagtatt 11048563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10210469 - 10210593
Alignment:
Q  1 gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatcttcaacatttcac 100  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| || | ||||||    
T  10210469 gatacatctagttgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacatctgcagcctttcac 10210568  T
Q  101 tggaaaaatcattaggagacaaaga 125  Q
    |||| | ||| ||||||||||||||    
T  10210569 tggatatatctttaggagacaaaga 10210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 10108665 - 10108510
Alignment:
Q  29 accttgtgatgcatattcccttagccaccattcc-tttaatatctttcagactcaacatcttcaacatttcactggaaaaatcattaggagacaaagatg 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| || | |||||||||||| ||| |||||||||||||| |    
T  10108665 accttgtgatgcatattcccttagccaccattccttttaatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg 10108566  T
Q  128 gt------gatgatagaatggtgaaggatgggttcaggatacgcagataaataaca 177  Q
    ||      |||| | |||| |||||| |||||||||||| | ||||||||||||||    
T  10108565 gtgtcggcgatggtggaatcgtgaagaatgggttcaggaaaagcagataaataaca 10108510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 10746768 - 10746921
Alignment:
Q  178 caaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacata 277  Q
    |||||||||||||||| |||||  | |||  ||||||| | |  ||||||||||||||| |||||||||||||||||||||  |||| ||||||||||||    
T  10746768 caaaagctattaatacgatgtccctagtataatattaaatctaaaccaaaacataggagtattcaaagaaacaatggaagactcaagaatttagaacata 10746867  T
Q  278 ----cctggaggagtgtagccaacggttccttttattccaattgtactagtatt 327  Q
        ||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  10746868 tatacctggaggagcatagccaacagttccttttattccaattgtactagtatt 10746921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 338
Target Start/End: Complemental strand, 10612174 - 10612014
Alignment:
Q  178 caaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacata 277  Q
    |||||||||||||||| ||| || | |||| | ||||||| | ||| ||||||||||| ||||||||||||| ||  ||| | || | ||||||||||||    
T  10612174 caaaagctattaatacaatgccactagtaaaacattaagtttacacaaaaacataggaaaattcaaagaaacgatcaaaggttcatgaatttagaacata 10612075  T
Q  278 cctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagagg 338  Q
    ||||||||||  |||||||| || ||||| |||||||||||  ||||||||||||||||||    
T  10612074 cctggaggagcatagccaacagtccctttaattccaattgtcttagtattcttatgagagg 10612014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 339
Target Start/End: Complemental strand, 10605190 - 10605055
Alignment:
Q  204 gtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttcc 303  Q
    |||| ||||||||||| ||||| || | || |||||| ||||||||||  |||||| |||| ||||||||||||||||||||||  || ||||| |||||    
T  10605190 gtaaaatattaagtatgcaccagaatagagtagaattgaaagaaacaactgaagattcaagaatttagaacatacctggaggagcatatccaacagttcc 10605091  T
Q  304 ttttattccaattgtactagtattcttatgagaggt 339  Q
    |||||| |||||||||||||||||  ||||||||||    
T  10605090 ttttatcccaattgtactagtatttatatgagaggt 10605055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 10740487 - 10740605
Alignment:
Q  225 aaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacata----cctggaggagtgtagccaacggttccttttattccaattgtac 320  Q
    |||||||| ||| ||| ||||||||||||| | || || | ||||||||||||    ||||||||||  |||||||| ||||||||||||||||||||||    
T  10740487 aaaacatacgaggatttaaagaaacaatgggatattcatgaatttagaacatatatacctggaggagcatagccaacagttccttttattccaattgtac 10740586  T
Q  321 tagtattcttatgagaggt 339  Q
    |||| | ||| ||||||||    
T  10740587 tagtttccttgtgagaggt 10740605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 10762921 - 10763039
Alignment:
Q  225 aaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacata----cctggaggagtgtagccaacggttccttttattccaattgtac 320  Q
    |||||||| ||| ||||||||||| ||||| |||  |||| ||| ||||||||    ||||||||||  |||||||| ||||||||||||||| ||||||    
T  10762921 aaaacatacgaggattcaaagaaataatgggagactcaagaattcagaacatatatacctggaggagcatagccaacagttccttttattccagttgtac 10763020  T
Q  321 tagtattcttatgagaggt 339  Q
    |||| | |||| |||||||    
T  10763021 tagtttccttaagagaggt 10763039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 10581414 - 10581303
Alignment:
Q  224 caaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactag 323  Q
    |||||||||  || ||||||| |||| |||||||   |||  ||||| ||||||||  ||||||  |||||||  ||||||||||||||| |||||||||    
T  10581414 caaaacatattaggattcaaataaacgatggaagtatcaataatttaaaacatacccagaggagcatagccaattgttccttttattccagttgtactag 10581315  T
Q  324 tattcttatgag 335  Q
    ||||||||||||    
T  10581314 tattcttatgag 10581303  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 10582450 - 10582307
Alignment:
Q  179 aaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacatac 278  Q
    ||||||| |||||||||||||  |||||  || ||||||   ||||||| |||||||  ||| |||||||||||||||||| ||||  ||||| || ||     
T  10582450 aaaagctgttaatactatgtcgctggtataattttaagtcaacaccaaa-cataggattattaaaagaaacaatggaagattcaagactttagtacgtat 10582352  T
Q  279 ctggaggagtgtagccaacggttccttttattccaattgtactag 323  Q
    || || |||  |||||||| ||||||||| | |||||||||||||    
T  10582351 ctagaagagcatagccaactgttccttttgtcccaattgtactag 10582307  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 9683111 - 9683233
Alignment:
Q  30 ccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatcttcaacatttcactggaaaaatcattaggagacaaagatggt 129  Q
    ||||||||||||||||||| |||| |||||||||||||| |||    ||||||||||||  | |         |||||||| |||||||||||||| ||     
T  9683111 ccttgtgatgcatattcccctagcaaccattcctttaatgtctacatgactcaacatctggagc---------gaaaaatctttaggagacaaagacgga 9683201  T
Q  130 gatgatagaatggtgaaggatgggttcaggat 161  Q
    | |||| |||| ||||||||||||| ||||||    
T  9683202 gttgatggaattgtgaaggatgggtccaggat 9683233  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 10559271 - 10559220
Alignment:
Q  273 acatacctggaggagtgtagccaacggttccttttattccaattgtactagt 324  Q
    |||||||||||||||  |||||||| || ||||||||||||||||| |||||    
T  10559271 acatacctggaggagcatagccaacagtcccttttattccaattgtgctagt 10559220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 10659921 - 10659974
Alignment:
Q  269 tagaacatacctggaggagtgtagccaacggttccttttattccaattgtacta 322  Q
    ||||| |||||||||||||  |||||||| || ||||| |||||||||||||||    
T  10659921 tagaaaatacctggaggagcatagccaacagtccctttaattccaattgtacta 10659974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 10210615 - 10210655
Alignment:
Q  137 gaatggtgaaggatgggttcaggatacgcagataaataaca 177  Q
    |||| |||||| |||||||||||||| ||||||||||||||    
T  10210615 gaatcgtgaagaatgggttcaggataagcagataaataaca 10210655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 10588273 - 10588321
Alignment:
Q  276 tacctggaggagtgtagccaacggttccttttattccaattgtactagt 324  Q
    ||||||||||||  |||||||| || ||||| |||||||||||||||||    
T  10588273 tacctggaggagcatagccaacagtccctttaattccaattgtactagt 10588321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 10652045 - 10652093
Alignment:
Q  276 tacctggaggagtgtagccaacggttccttttattccaattgtactagt 324  Q
    ||||||||||||  |||||||| || ||||| |||||||||||||||||    
T  10652045 tacctggaggagcatagccaacagtccctttaattccaattgtactagt 10652093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 12899974 - 12899873
Alignment:
Q  238 attcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagag 337  Q
    ||||||| |||||||||||||| |||| ||||| |||||||| |||||||  || ||||| |||||||||||||||||||| ||||||||||||||||||    
T  12899974 attcaaaaaaacaatggaagattcaagaatttaaaacatacccggaggagcataaccaactgttccttttattccaattgtgctagtattcttatgagag 12899875  T
Q  338 gt 339  Q
    ||    
T  12899874 gt 12899873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 12958482 - 12958381
Alignment:
Q  238 attcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagag 337  Q
    ||||||| |||||||||||||| |||| ||||| |||||||| |||||||  || ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  12958482 attcaaaaaaacaatggaagattcaagaatttaaaacatacccggaggagcataaccaactgttccttttattccaattgtgctagtattcttattagag 12958383  T
Q  338 gt 339  Q
    ||    
T  12958382 gt 12958381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 12907594 - 12907493
Alignment:
Q  238 attcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagag 337  Q
    ||||||| ||||||||||||||  ||| ||||| |||||||| || ||||  || ||||| |||||||||||||| ||| | ||||||||||||||||||    
T  12907594 attcaaaaaaacaatggaagattaaagaatttaaaacatacccggtggagcataaccaactgttccttttattccgattatgctagtattcttatgagag 12907495  T
Q  338 gt 339  Q
    ||    
T  12907494 gt 12907493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 12949040 - 12948947
Alignment:
Q  246 aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggt 339  Q
    |||||||||||||| |||| || || ||| |||| || ||||  || ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  12949040 aaacaatggaagattcaagaatgtaaaacgtacccggtggagcataaccaactgttccttttattccaattgtactagtattcttattagaggt 12948947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 12932675 - 12932582
Alignment:
Q  246 aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggt 339  Q
    |||||||||||||| |||| ||||| |||||||| || ||||  || ||||| |||||||||| ||| ||||| ||||||||||||| ||||||    
T  12932675 aaacaatggaagattcaagaatttaaaacatacccggtggagcataaccaactgttccttttactccgattgtgctagtattcttattagaggt 12932582  T

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Target: scaffold0692 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 7697 - 7603
Alignment:
Q  238 attcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttat 332  Q
    ||||||| |||||||||||||| |||| ||||| |||||||| || ||||  || ||| | |||||||||||||| ||||| |||||||||||||    
T  7697 attcaaaaaaacaatggaagattcaagaatttaaaacatacccggtggagcataaccagctgttccttttattccgattgtgctagtattcttat 7603  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 17923216 - 17923309
Alignment:
Q  246 aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggt 339  Q
    |||||| | ||||| |||| ||||| |||||||| |  ||||  || ||||| |||||||||||||| || |||||||||||||||| ||||||    
T  17923216 aaacaaagcaagattcaagaatttaaaacatacccgatggagcataaccaactgttccttttattccgatcgtactagtattcttattagaggt 17923309  T

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