View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_28 (Length: 358)
Name: NF20367_low_28
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_28 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 19288 - 18950
Alignment:
| Q |
15 |
cagaaatatcattcagagaattttgtgcagctacagaagannnnnnnatcatactcgaatggtcatgcaaaaaatgtactcaaactacaaaaagatgtgg |
114 |
Q |
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| T |
19288 |
cagaaatatcattcagagaattttgtgcagctacagaagattttct-atcatactcgaatggtcatgcaaaaaatgtactcaaactacaaaaagatgtgg |
19190 |
T |
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| Q |
115 |
ggattttcacttgtgtttacacaaacaagtttataatagataatcaatacagttattatgcaataagttattacaaaatacaaatgttttcaaagaaaat |
214 |
Q |
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| T |
19189 |
ggattttcacttgcgtttacacaaacaagtttataatagaaaatcaatacagttattatgcaataagttattacaaaatacaaatgttttcaaagaaaat |
19090 |
T |
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| Q |
215 |
ata---aatgaacatcaagagagccattaatgccttaactagaacagatacgatggcaactataactataacaataattcagtatcagatttgcttcaaa |
311 |
Q |
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| T |
19089 |
ataaataataaacatcaagagagccattaatgtcttaactagaacagatacgatggcaactataactataacaataattcagtgtcagatttgcttcaaa |
18990 |
T |
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| Q |
312 |
ccagattacaatgcaatcatttgttatggtgcttcatctc |
351 |
Q |
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| T |
18989 |
ccagattacaatgcaatcatttgttatggtgcttaatctc |
18950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 5874 - 5618
Alignment:
| Q |
15 |
cagaaatatcattcagagaattttgtgcagctacagaagannnnnnnat--catactcgaa-tggtcatgcaaaaaatgtactcaaactacaaaaagatg |
111 |
Q |
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| T |
5874 |
cagaaatatcattcaaagaattttgtgcagctacaaaaaaatattttatatcatactcaaaatggtcctgtaaaaattgtactcaaactaaacaaagatg |
5775 |
T |
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| Q |
112 |
tggggattttcacttgtgtttacacaaacaagtttataatagataatcaatacagttattatgcaataagttattacaaaatacaaatgttttcaaagaa |
211 |
Q |
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| T |
5774 |
tggggatttccacctgcctttacacaaacaggtttagaattgaaaaacaacacagttattatgcaataagttactacaaaatacaaatgtttccaaagaa |
5675 |
T |
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| Q |
212 |
aatataaatgaacatcaagagagccattaatgccttaactagaacagatacgatggc |
268 |
Q |
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| T |
5674 |
agtctaaataaacatcaagagggacattaatgtcttaactagaacagatactatggc |
5618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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