View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_3 (Length: 655)
Name: NF20367_low_3
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 140 - 644
Target Start/End: Original strand, 5129235 - 5129731
Alignment:
| Q |
140 |
ttactataattgcaaccaacnnnnnnnactgacaaatgataagacagtaattcataaatgtagtgttcgtgttttcaagcatgctttccttaaattcttt |
239 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5129235 |
ttactataattgcaaccaactttttttactgacaaatgataagacagtaattcataaatgtagtgtttgtgttttcaagcatgctttccttaaattcttt |
5129334 |
T |
|
| Q |
240 |
attttgtatgttgttacacgatgcttataatatcatctgacatctcaagcaacatcatgcaaaaaattgaaattgtttaaatctaatcaatcaatttgat |
339 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5129335 |
attttgtatgttgtgacacgatgcttataatatcatcttacatctcaagcaacatcatgcaaaaaattgaaattgtttaaatctaatcaatcaatttgat |
5129434 |
T |
|
| Q |
340 |
caaagctcctcaaataagtggttatatttcagactcaggattcagaaacccttttcaaggagcagataaagactaagaagacaagatagatgaagaaaag |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5129435 |
caaagctcctcaaataagtggttatatttcagactcaggattcaaaaacgcttttcaaggagcagataaagactaagaagacaagatagatgaagaaaag |
5129534 |
T |
|
| Q |
440 |
catatataagacatcaggaaactgaatgataaagaactgtcttgtttttcctaatgaaggtaacaaggtagcaagtcattctccgaaaaccatagataat |
539 |
Q |
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| T |
5129535 |
catatataagacatcaggaaactgaatgataa--aactg---agcattaagcact--cggcaacaaggtagcaagtcattctctgaaaaccatagataat |
5129627 |
T |
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| Q |
540 |
gactaatgaacagagattaaattttacaataaaaagaaaagacatcatttgcatcctaaaacaagaactttcataaccctacctattgtatggaagttgc |
639 |
Q |
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| T |
5129628 |
gactaatgaacagagattaaagtttacaa-aaaaagaaaagacatcattttcatcctaaaacaagaactttcataaccctacctattgtatggaagttgc |
5129726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 5128403 - 5128535
Alignment:
| Q |
19 |
caaattaccccgttggaaaccagaagtttaagacaaaaacaaaatttgaattccacaatctactttcaactactctaattaattgagt---nnnnnnncc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5128403 |
caaattaccccgttggaaaccagaagtttaagacaaaaacaaaatttgaattccacaatctactttcaactactctaattaattgagtaaaaaaaaaacc |
5128502 |
T |
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| Q |
116 |
actactataacttatacatgtattttactataa |
148 |
Q |
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| T |
5128503 |
actactataacttatacatgtattttactataa |
5128535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 1601575 - 1601534
Alignment:
| Q |
377 |
ggattcagaaacccttttcaaggagcagataaagactaagaa |
418 |
Q |
| |
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| T |
1601575 |
ggattcagaaacccttttcaaggagcagttaaagactaagaa |
1601534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 8527497 - 8527534
Alignment:
| Q |
377 |
ggattcagaaacccttttcaaggagcagataaagacta |
414 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||| |
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| T |
8527497 |
ggattcagaaacccttttcaaggagcagttaatgacta |
8527534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 8534088 - 8534125
Alignment:
| Q |
377 |
ggattcagaaacccttttcaaggagcagataaagacta |
414 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||| |
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| T |
8534088 |
ggattcagaaacccttttcaaggagcagttaatgacta |
8534125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 48363207 - 48363166
Alignment:
| Q |
377 |
ggattcagaaacccttttcaaggagcagataaagactaagaa |
418 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||| |
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| T |
48363207 |
ggattcagaaacccttttcaaggagcagttaaagattaagaa |
48363166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 9441831 - 9441868
Alignment:
| Q |
377 |
ggattcagaaacccttttcaaggagcagataaagacta |
414 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||| |
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| T |
9441831 |
ggattcagaaacccttttcaaggagcagttaatgacta |
9441868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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