View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_34 (Length: 331)

Name: NF20367_low_34
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_34
NF20367_low_34
[»] chr1 (6 HSPs)
chr1 (129-331)||(4407737-4407939)
chr1 (5-112)||(4407599-4407706)
chr1 (173-266)||(513035-513128)
chr1 (164-330)||(8414580-8414746)
chr1 (165-266)||(11911667-11911768)
chr1 (168-229)||(44581809-44581870)
[»] chr3 (15 HSPs)
chr3 (133-326)||(11503297-11503490)
chr3 (159-330)||(44471035-44471206)
chr3 (164-328)||(30554541-30554705)
chr3 (143-326)||(12937710-12937892)
chr3 (159-266)||(28550525-28550632)
chr3 (133-206)||(47831245-47831317)
chr3 (164-271)||(22240584-22240691)
chr3 (143-254)||(54246526-54246637)
chr3 (164-265)||(779499-779601)
chr3 (19-110)||(35847362-35847452)
chr3 (136-226)||(13870321-13870410)
chr3 (165-331)||(26757610-26757776)
chr3 (133-266)||(27524099-27524232)
chr3 (146-266)||(44681981-44682102)
chr3 (187-235)||(46892707-46892755)
[»] chr7 (10 HSPs)
chr7 (142-316)||(46265283-46265457)
chr7 (133-266)||(2197641-2197774)
chr7 (182-316)||(2922986-2923119)
chr7 (159-261)||(48070701-48070803)
chr7 (137-330)||(3996918-3997110)
chr7 (133-225)||(35738104-35738196)
chr7 (190-272)||(27226931-27227013)
chr7 (133-331)||(12470980-12471178)
chr7 (143-219)||(30396346-30396422)
chr7 (58-110)||(35738033-35738084)
[»] chr6 (9 HSPs)
chr6 (133-266)||(9826819-9826952)
chr6 (186-330)||(2454133-2454277)
chr6 (129-266)||(7551361-7551498)
chr6 (19-110)||(20722511-20722601)
chr6 (182-318)||(23300455-23300591)
chr6 (187-266)||(23301493-23301572)
chr6 (131-261)||(32613821-32613945)
chr6 (187-266)||(11846322-11846401)
chr6 (175-265)||(23585936-23586026)
[»] chr4 (5 HSPs)
chr4 (133-330)||(53393126-53393323)
chr4 (133-240)||(8056820-8056926)
chr4 (136-263)||(8606106-8606233)
chr4 (186-266)||(42141330-42141410)
chr4 (55-110)||(8606029-8606083)
[»] chr8 (7 HSPs)
chr8 (133-265)||(3767627-3767759)
chr8 (133-272)||(25456103-25456242)
chr8 (143-331)||(16570843-16571030)
chr8 (133-249)||(9040511-9040627)
chr8 (189-288)||(34760833-34760932)
chr8 (187-240)||(25808310-25808363)
chr8 (133-266)||(44223298-44223431)
[»] chr2 (8 HSPs)
chr2 (173-265)||(38607049-38607141)
chr2 (153-328)||(3919846-3920021)
chr2 (133-266)||(29109133-29109266)
chr2 (143-265)||(5526300-5526421)
chr2 (133-240)||(30340479-30340586)
chr2 (189-330)||(13852296-13852437)
chr2 (49-110)||(28199815-28199875)
chr2 (168-289)||(44018948-44019064)
[»] scaffold0070 (1 HSPs)
scaffold0070 (133-272)||(13822-13961)
[»] chr5 (3 HSPs)
chr5 (134-213)||(17770347-17770425)
chr5 (19-104)||(39786193-39786277)
chr5 (133-266)||(41091972-41092105)
[»] scaffold1335 (1 HSPs)
scaffold1335 (19-110)||(811-901)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 4407737 - 4407939
Alignment:
Q  129 aggaataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaaga 228  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  4407737 aggaataatattagtaaaatgggaagtggagttaacatcggtttggtttatcagtttcttggatctcaaaatgaaaaaatgagaatcgaaccaaacaaga 4407836  T
Q  229 taggtttagattagtccggttcggttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgt 328  Q
    || ||||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||||||| ||||| |||||| |||||| ||||||||||    
T  4407837 tatgtttagattagtccggttcggttttgaaccgaaccagacaatgtcgaatactttttcgatttggtctgatttaaacttttggtttcgtcggttttgt 4407936  T
Q  329 cca 331  Q
    |||    
T  4407937 cca 4407939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 4407599 - 4407706
Alignment:
Q  5 tgtcgaagaatatgaggacttgataatgtcattaataaagtgaagatggaagaaagtgaattgatcaaggagtattttatgtcggacttttaattttggg 104  Q
    ||||||| || | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4407599 tgtcgaataaaaggaggacttgataatgtcattaataaagtgaagatgggagaaagtgaattgatcaaggagtattttatgttggacttttaattttggg 4407698  T
Q  105 cctaatta 112  Q
     |||||||    
T  4407699 tctaatta 4407706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 513128 - 513035
Alignment:
Q  173 ggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacc 266  Q
    |||||||| |||| |||||||||||||| |||||  |||||||||| ||||| |||| ||||||| || || ||||| ||||||||||||||||    
T  513128 ggtttatcggtttattggatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaacc 513035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 330
Target Start/End: Original strand, 8414580 - 8414746
Alignment:
Q  164 catcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccga 263  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||| | ||||| ||||||||| |||| ||||||  |   | |||||| |||||||||| |    
T  8414580 catcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaatagaaccaaactagattggtttatgtgtcttcggttcagttttgaaccaa 8414679  T
Q  264 acctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgtcc 330  Q
    |||  ||||  ||  ||||||||| | ||| || |  |||| | |||| ||||||||||||||||||    
T  8414680 accaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtcc 8414746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 11911768 - 11911667
Alignment:
Q  165 atcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaa 264  Q
    |||||||||||| ||| |||  | |||| ||||||| ||||| ||||||   || ||||| |||| ||||||| || || ||||||||||||||||||||    
T  11911768 atcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaa 11911669  T
Q  265 cc 266  Q
    ||    
T  11911668 cc 11911667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 44581809 - 44581870
Alignment:
Q  168 ggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagat 229  Q
    ||||||||| ||| ||| ||||||||||||||| ||||| |||||| |||| ||||| ||||    
T  44581809 ggtttggttcatcggttatttggatctcaaaataaaaaatcaagaaccgaatcaaactagat 44581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 326
Target Start/End: Original strand, 11503297 - 11503490
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||| | |||||||||| ||||  |||| ||| |||| |||||||| |||| |||||||||||||||||||| | |||| | ||||||| ||||| ||    
T  11503297 ataataatagtaaaatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcgg 11503396  T
Q  233 tttagattagtccggttcggttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggtttt 326  Q
    ||| |||| || |||||||||||||||||  ||| |||||  ||  |||| |||||| |||||| || |||| |||||| ||||||||||||||    
T  11503397 tttcgattggttcggttcggttttgaaccttaccagacaaggtcggatacatttttggtttggttcggtttggactttcagtttcatcggtttt 11503490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 330
Target Start/End: Complemental strand, 44471206 - 44471035
Alignment:
Q  159 gttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttga 258  Q
    |||| |||||||| |||| ||| ||| ||||||| ||||||| ||||| |||||| |||||||||| |||| |||||||||| ||  |||||||||||||    
T  44471206 gttagcatcggttcggttcatcggttctttggatttcaaaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttttga 44471107  T
Q  259 accgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgtcc 330  Q
    |||||||   ||||  ||  |||| |||| | |||||| || |||| | ||||| |||||||||||||||||    
T  44471106 accgaactaaacaaggtcggatacattttcggtttggttcggtttggattttcgatttcatcggttttgtcc 44471035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 328
Target Start/End: Original strand, 30554541 - 30554705
Alignment:
Q  164 catcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccga 263  Q
    |||||||| | || ||||||| ||||||| ||||||| ||||| | |||| |||||||||| |||| |||||||||| || ||||||| |||||||||||    
T  30554541 catcggttcgattcatcagttctttggatatcaaaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccga 30554640  T
Q  264 acctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgt 328  Q
    ||   ||||  ||  ||||||||| | ||| |  ||||||| | |||||||||||||| ||||||    
T  30554641 actaaacaaggtcggatactttttcggtttagctcgatttggattttcggtttcatcgattttgt 30554705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 326
Target Start/End: Original strand, 12937710 - 12937892
Alignment:
Q  143 taaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattag 242  Q
    ||||||| |||||| ||||||||||||||||||| ||  | | ||||||||| || ||||||||   |||| |||||||||   ||| ||||||| || |    
T  12937710 taaaatgagaagtg-agttaacatcggtttggttcattggatctttggatcttaagatgaaaaattgagaaccgaaccaaaattgatcggtttaggttgg 12937808  T
Q  243 tccggttcggttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggtttt 326  Q
    | |||||||||||| || | ||||  ||||  || |||||||||| ||||| || || |||| | |||||||||||||| ||||    
T  12937809 ttcggttcggttttcaatcaaaccaaacaaaatctaatactttttcgatttagttcggtttggattttcggtttcatcgatttt 12937892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 28550632 - 28550525
Alignment:
Q  159 gttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttga 258  Q
    |||||||||| || |||| ||| ||| ||| ||||||||||| ||||| | ||||||||||||||| ||||  |||||  || || |||||||| |||||    
T  28550632 gttaacatcgattcggttcatcggttctttagatctcaaaattaaaaaccgagaatcgaaccaaactagatccgtttaagttggttcggttcggatttga 28550533  T
Q  259 accgaacc 266  Q
    ||||||||    
T  28550532 accgaacc 28550525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 47831245 - 47831317
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaa 206  Q
    |||||||| ||||||| || ||||| |||||||||||||||||| ||  ||||||||||||||||||| |||||    
T  47831245 ataatattagtaaaattgggagtgg-gttaacatcggtttggttcataggttttttggatctcaaaataaaaaa 47831317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 22240691 - 22240584
Alignment:
Q  164 catcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccga 263  Q
    ||||||||||||||||| |||  ||||||||||||||| |||| | ||||||||||| | |||| | | ||||| || || ||||||| || |||||| |    
T  22240691 catcggtttggtttatcggttccttggatctcaaaatgtaaaaccgagaatcgaacccagcaaggtcgatttagtttggttcggttcgattatgaaccta 22240592  T
Q  264 acctgaca 271  Q
    ||| ||||    
T  22240591 accagaca 22240584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 54246637 - 54246526
Alignment:
Q  143 taaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattag 242  Q
    ||||||||| |||| ||||| |||||||||||||  || ||| ||||||||||||||| |||||   |||| |||||||||||  || ||||| | || |    
T  54246637 taaaatggggagtgaagttagcatcggtttggttcgtcggttctttggatctcaaaattaaaaattgagaaccgaaccaaacattatcggtttgggttgg 54246538  T
Q  243 tccggttcggtt 254  Q
    | ||||||||||    
T  54246537 ttcggttcggtt 54246526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 779499 - 779601
Alignment:
Q  164 catcggtttggtttatcagttttttggatctcaaaa-tgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccg 262  Q
    |||||||| |||| ||| ||| ||||||| |||||| | ||||| |||||| |||||||||| |||| ||||||| || || || ||| |||||||||||    
T  779499 catcggttcggttcatcggttctttggatttcaaaaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttttgaaccg 779598  T
Q  263 aac 265  Q
    |||    
T  779599 aac 779601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 35847452 - 35847362
Alignment:
Q  19 aggacttgataatgtcattaataaagtgaagatggaagaaagtgaattgatcaaggagtattttatgtcggacttttaattttgggcctaat 110  Q
    ||||||||||||||||||||||||||||| ||| |   |||||||||  || ||  ||||| |||||| ||| |||||||||| ||||||||    
T  35847452 aggacttgataatgtcattaataaagtgatgattggttaaagtgaatgaattaaaaagtatattatgttgga-ttttaattttaggcctaat 35847362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 13870410 - 13870321
Alignment:
Q  136 atatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaa 226  Q
    ||||| ||||||||||  ||| ||||| |||||||| ||| | || ||| ||||||||||||||| ||||| |||||| |||| |||||||    
T  13870410 atattagtaaaatggggggtg-agttagcatcggttcggtctttcggttctttggatctcaaaatcaaaaaccaagaaccgaatcaaacaa 13870321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 331
Target Start/End: Complemental strand, 26757776 - 26757610
Alignment:
Q  165 atcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaa 264  Q
    |||||||  |||||||  || ||||||||||||||| ||||  |||||| |||||||| | | || | ||||| || || |||||| ||||| |||  ||    
T  26757776 atcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaa 26757677  T
Q  265 cctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgtcca 331  Q
    ||  ||||  || |||||||||| ||||| ||  |||||| | ||||| |||||| |||||||||||    
T  26757676 ccaaacaacgtcgaatactttttcgattttgtttgatttggattttcgatttcattggttttgtcca 26757610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 27524232 - 27524099
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||| | |||||||||| ||||| |||| ||| |||| |||| |||  ||  |||||||| ||||| |||||   |||| ||||||||||||| | |     
T  27524232 ataataatagtaaaatggggagtggggttaccattggttcggttcatcgattccttggatctgaaaattaaaaacagagaaccgaaccaaacaaggtcga 27524133  T
Q  233 tttagattagtccggttcggttttgaaccgaacc 266  Q
    |||||||| ||  |||| |||||||| |||||||    
T  27524132 tttagattggtttggtttggttttgatccgaacc 27524099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 44681981 - 44682102
Alignment:
Q  146 aatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggttta-gattagtc 244  Q
    |||||||||||  |||| |||||||| ||||| || |||  | |||| ||||||| ||||| |||||| | |||||||| |||| |||||| | || ||     
T  44681981 aatgggaagtgaggttagcatcggttcggtttgtcggttcatcggatttcaaaattaaaaaccaagaaccaaaccaaactagatcggtttaggtttggtt 44682080  T
Q  245 cggttcggttttgaaccgaacc 266  Q
    | |||||||||||| |||||||    
T  44682081 cagttcggttttgatccgaacc 44682102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 46892755 - 46892707
Alignment:
Q  187 ttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggttt 235  Q
    |||||||||||||| ||||| | ||||||||||||||| |||| |||||    
T  46892755 ttggatctcaaaattaaaaaccgagaatcgaaccaaactagattggttt 46892707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 316
Target Start/End: Original strand, 46265283 - 46265457
Alignment:
Q  142 gtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagatta 241  Q
    |||||||| | |||||||||||||| | ||||||| ||| |||| |||||||||||||||| |||   | || | ||||||||||||| ||||||||||     
T  46265283 gtaaaatgaggagtggagttaacattgatttggttcatcggtttcttggatctcaaaatgacaaactgaaaaccaaaccaaacaagatcggtttagattg 46265382  T
Q  242 gtccggttcggttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggttt 316  Q
     | |||||||||||||||||||||| |||||  ||  |||| |||||| |||||| || |||| |||||||||||    
T  46265383 attcggttcggttttgaaccgaacccgacaaggtcggatacatttttggtttggttcggtttggactttcggttt 46265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 2197641 - 2197774
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||||| |||||||||| |||| ||||| ||||||||||||| ||| |||| |||||||||||||||||||| | |||| | || |||||||| | |     
T  2197641 ataatattagtaaaatggggagtgaagttagcatcggtttggttgatcggtttcttggatctcaaaatgaaaaaccgagaacccaatcaaacaaggtcga 2197740  T
Q  233 tttagattagtccggttcggttttgaaccgaacc 266  Q
    |||||||| || | | ||||||| ||||||||||    
T  2197741 tttagattggttcagatcggtttagaaccgaacc 2197774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 316
Target Start/End: Complemental strand, 2923119 - 2922986
Alignment:
Q  182 gttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacctgacaatctcaaata 281  Q
    |||| |||||||||||||||||||| |||||| |||| |||||||| | ||| |||||| || ||||||||||||||||||||||  ||||  |  ||||    
T  2923119 gtttcttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggttgaata 2923020  T
Q  282 cttttttgatttggtccgatttgaactttcggttt 316  Q
    | |||||| |||||| || |||| |||||||||||    
T  2923019 catttttggtttggttcg-tttggactttcggttt 2922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 48070803 - 48070701
Alignment:
Q  159 gttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttga 258  Q
    |||||||||||||  ||||||| ||| ||||||||||||||| ||||| | |||| |||| ||||| |||| ||||||| ||||| ||||||||||||||    
T  48070803 gttaacatcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggttttga 48070704  T
Q  259 acc 261  Q
    |||    
T  48070703 acc 48070701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 330
Target Start/End: Original strand, 3996918 - 3997110
Alignment:
Q  137 tatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggttta 236  Q
    |||| ||||||| || |||||||||| || ||||| |||| ||  |||  |||||||||||||||||||  | |||| ||||||||||||| | ||||||    
T  3996918 tattagtaaaattgggagtggagttaccaacggttcggttcataggttccttggatctcaaaatgaaaac-cgagaaccgaaccaaacaaggttggttta 3997016  T
Q  237 gattagtccggttcggttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgtcc 330  Q
    |||| ||  |||||||||||||||| ||||  ||||  ||  || ||| || | |||||| || |||| |||||||||||||| ||||||||||    
T  3997017 gattggttaggttcggttttgaaccaaaccaaacaaagtcggattcttcttcggtttggtacggtttggactttcggtttcattggttttgtcc 3997110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 35738104 - 35738196
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaaca 225  Q
    |||||||| |||||||||| ||||| ||||  ||| |||||||| ||| |||  ||||||||||||||||||||   |||| |||||||||||    
T  35738104 ataatattagtaaaatggggagtggggttacaatcagtttggttgatcggttccttggatctcaaaatgaaaaactgagaaccgaaccaaaca 35738196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 27226931 - 27227013
Alignment:
Q  190 gatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacctgacaa 272  Q
    ||||| ||||| ||||| |||||| ||||||||||||| | |||||||||| || |||||||| ||||| || |||| |||||    
T  27226931 gatcttaaaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttcggctttgatccaaaccagacaa 27227013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 331
Target Start/End: Original strand, 12470980 - 12471178
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    ||||||||  ||||||||| ||||   ||||||||| ||  ||| ||| ||||||||||||||||||| |||||   |||| ||||| |||| |||  |     
T  12470980 ataatattactaaaatggggagtgagattaacatcgattaagttcatcggttttttggatctcaaaattaaaaactgagaaccgaactaaactagaccga 12471079  T
Q  233 tttagattagtccggttcggttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgtcca 331  Q
    ||||| || ||  |||||| |||||||| |||||  |||   ||| |||||||||   ||| || || |||||| | ||||||||||||||||| ||||    
T  12471080 tttaggttggttaggttcgattttgaactgaaccaaacaggatcagatactttttcagttttgttcggtttgaattctcggtttcatcggttttatcca 12471178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 30396422 - 30396346
Alignment:
Q  143 taaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaac 219  Q
    |||||| || |||||||||| ||||| ||  ||| |||||||| |||||| |||||||||||| || |||| |||||    
T  30396422 taaaatagggagtggagttagcatcgattcagttcatcagtttcttggatttcaaaatgaaaatacgagaaccgaac 30396346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 35738033 - 35738084
Alignment:
Q  58 aagtgaattgatcaaggagtattttatgtcggacttttaattttgggcctaat 110  Q
    |||||||| ||| |||||||||||||||| |||  ||||||||||||||||||    
T  35738033 aagtgaatggattaaggagtattttatgttgga-atttaattttgggcctaat 35738084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 9826952 - 9826819
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    ||||||||  ||||| ||||||||  ||||||||| |||||||| ||| ||| ||||||| ||||||| ||||| | ||||||||||||||| |||| ||    
T  9826952 ataatattactaaaacgggaagtgaggttaacatcagtttggttcatcggttctttggatttcaaaattaaaaaccgagaatcgaaccaaactagatcgg 9826853  T
Q  233 tttagattagtccggttcggttttgaaccgaacc 266  Q
    ||||  || || |||||||||||| |||||||||    
T  9826852 tttatgttggttcggttcggttttcaaccgaacc 9826819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 330
Target Start/End: Original strand, 2454133 - 2454277
Alignment:
Q  186 tttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacctgacaatctcaaatacttt 285  Q
    ||||||||||||||| ||||| ||||||||||||||||| | ||  |||||| || || ||||||| ||||||||||||||| | ||  ||  |||||||    
T  2454133 tttggatctcaaaattaaaaaccaagaatcgaaccaaactatatcagtttaggttggttcggttcgattttgaaccgaacctaataaagtcggatacttt 2454232  T
Q  286 tttgatttggtccgatttgaactttcggtttcatcggttttgtcc 330  Q
     | | |||| | | ||||||| ||||  |||||||||||||||||    
T  2454233 ctcggtttgattccatttgaattttcaatttcatcggttttgtcc 2454277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 7551361 - 7551498
Alignment:
Q  129 aggaataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaaga 228  Q
    ||||||||||||||||||||||  ||||| |||| |||||||| | || |||  ||  ||| ||||| |||||||||| |||||| ||| ||||||||      
T  7551361 aggaataatatttgtaaaatggagagtggggttaccatcggttcgattcatcgtttccttgtatctcgaaatgaaaaatcaagaaccgacccaaacaaag 7551460  T
Q  229 taggtttagattagtccggttcggttttgaaccgaacc 266  Q
      |||||||||| || ||||| |||||||| |||||||    
T  7551461 ccggtttagattggttcggtttggttttgatccgaacc 7551498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 20722601 - 20722511
Alignment:
Q  19 aggacttgataatgtcattaataaagtgaagatggaagaaagtgaattgatcaaggagtattttatgtcggacttttaattttgggcctaat 110  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||  || ||| |||| ||||||| || | ||||||||||| ||||||    
T  20722601 aggacttgataatgtcaataataaagtgatgatggcagaaagtgaatgcattaagaagtaatttatgttgggc-tttaattttggccctaat 20722511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 23300591 - 23300455
Alignment:
Q  182 gttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacctgacaatctcaaata 281  Q
    |||| |||||||||||||| ||||| | |||| ||||| |||| ||||  |||||| || || |||||| |||||||||||||||  ||||  || | |     
T  23300591 gtttgttggatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgattt 23300492  T
Q  282 cttttttgatttggtccgatttgaactttcggtttca 318  Q
    |||||| | |||||| || |||||| |||||||||||    
T  23300491 ctttttcggtttggttcggtttgaattttcggtttca 23300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 23301572 - 23301493
Alignment:
Q  187 ttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacc 266  Q
    |||||||||||||| |||||   |||| |||||||||| ||||  |||||| || || ||||||||||||||||||||||    
T  23301572 ttggatctcaaaattaaaaactgagaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaacc 23301493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 32613821 - 32613945
Alignment:
Q  131 gaataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagata 230  Q
    ||||||||||  ||||||||||| ||  |||| ||||||||||||| ||||||| |||||      || | ||||| ||| ||| ||||||||| ||||     
T  32613821 gaataatattattaaaatgggaactgaggttagcatcggtttggttcatcagttctttgg------aacttaaaaaccaaaaatggaaccaaactagatc 32613914  T
Q  231 ggtttagattagtccggttcggttttgaacc 261  Q
    ||||||| || || |||||||||||||||||    
T  32613915 ggtttaggttggttcggttcggttttgaacc 32613945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 11846401 - 11846322
Alignment:
Q  187 ttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacc 266  Q
    |||||||||||||| ||||| | |||| |||||||||| |||| ||||||  || || | ||||||||||||||| ||||    
T  11846401 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaagttggttcagttcggttttgaaccaaacc 11846322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 23586026 - 23585936
Alignment:
Q  175 tttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaac 265  Q
    ||||||| ||||||| |||||||||| ||||  | |||| | |||||||| | || ||||||  |||||  ||||||||||||||||||||    
T  23586026 tttatcaattttttgaatctcaaaattaaaatccgagaaccaaaccaaactatatcggtttacgttagtttggttcggttttgaaccgaac 23585936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 330
Target Start/End: Original strand, 53393126 - 53393323
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    ||||||||  |||||||| |||||  |||| |||||||| |||| ||| |||  |||||| ||||| | | ||| | |||| |||||||||| |||| ||    
T  53393126 ataatattactaaaatggaaagtgaggttagcatcggttcggttcatcggttcattggatttcaaagttataaaccgagaaccgaaccaaactagatcgg 53393225  T
Q  233 tttagattagtccggttcggttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgtcc 330  Q
    ||||| || || |||||| ||||| |||||||||  ||||  ||  ||||||||||| |||||| || |||| | |||||||||||||||||||||||    
T  53393226 tttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggattttcggtttcatcggttttgtcc 53393323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 8056926 - 8056820
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||||| |||||||||| ||||| ||||  |||||||  ||| ||| |||| ||||||||||||||| |||| | |||| ||||||||||||| | ||    
T  8056926 ataatattagtaaaatggggagtggggttaggatcggttcagttcatcggtttcttggatctcaaaatg-aaaatcgagaaccgaaccaaacaagttcgg 8056828  T
Q  233 tttagatt 240  Q
    ||||||||    
T  8056827 tttagatt 8056820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 263
Target Start/End: Original strand, 8606106 - 8606233
Alignment:
Q  136 atatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggttt 235  Q
    ||||| |||||||||| ||||  |||| |||||||| | || ||  |||  ||||||||||||||||||||   |||| |||||||| |||||| |||||    
T  8606106 atattagtaaaatggggagtgtggttaccatcggttcgattcattggttccttggatctcaaaatgaaaaactgagaaccgaaccaaccaagatcggttt 8606205  T
Q  236 agattagtccggttcggttttgaaccga 263  Q
    ||||| || || || |||||||||||||    
T  8606206 agattggttcgatttggttttgaaccga 8606233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 42141410 - 42141330
Alignment:
Q  186 tttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacc 266  Q
    ||||||||||||||| ||||| |||||| |||||||||  |||| | ||||| || || | ||||||||||||||||||||    
T  42141410 tttggatctcaaaattaaaaaccaagaaccgaaccaaagtagatcgatttaggtttgttcagttcggttttgaaccgaacc 42141330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 8606029 - 8606083
Alignment:
Q  55 agaaagtgaattgatcaaggagtattttatgtcggacttttaattttgggcctaat 110  Q
    |||||||||||  || |||||||||||||||| |||| ||||||||||||||||||    
T  8606029 agaaagtgaatgaattaaggagtattttatgttggac-tttaattttgggcctaat 8606083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 3767627 - 3767759
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    ||||||||  ||||||||| ||||  |||| |||||||| |||| ||| |||  |||||||||||||| ||||| | |||| | |||||||| |||| ||    
T  3767627 ataatattactaaaatggggagtgaggttagcatcggttcggttcatcggttcattggatctcaaaataaaaaaccgagaaccaaaccaaactagatcgg 3767726  T
Q  233 tttagattagtccggttcggttttgaaccgaac 265  Q
    |||||||| || |||||||||||||||||||||    
T  3767727 tttagattggttcggttcggttttgaaccgaac 3767759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 25456103 - 25456242
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||| | |||||||||| ||||  |||| |||| ||| | || ||| |||| |||||||||||||||||||| | | || | ||||||||||||| ||    
T  25456103 ataataatagtaaaatggggagtgaggttagcatcagttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaacaagattgg 25456202  T
Q  233 tttagattagtccggttcggttttgaaccgaacctgacaa 272  Q
    ||||||||  | |||||||||||||||| ||||| |||||    
T  25456203 tttagattgattcggttcggttttgaactgaaccagacaa 25456242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 331
Target Start/End: Original strand, 16570843 - 16571030
Alignment:
Q  143 taaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattag 242  Q
    ||||||||| |||| ||||| ||||||||  ||| ||| ||| ||||||||||||||| ||||| | |||| | |||||||  |||| ||||||| || |    
T  16570843 taaaatggggagtgaagttagcatcggttcagttcatcggttctttggatctcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttgg 16570942  T
Q  243 tccggttcggttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgtcca 331  Q
    |  |||||||||||||||| ||||  ||||  |   ||| ||||||| |||||| || |||||| ||| | ||||||||||||||||||    
T  16570943 tttggttcggttttgaaccaaaccaaacaaggttggata-ttttttggtttggttcggtttgaatttttgatttcatcggttttgtcca 16571030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 249
Target Start/End: Complemental strand, 9040627 - 9040511
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||| | |||||||||||||||| |||| ||||   | |||| ||| |||| || ||||||||||||||||| | |||| | ||||||||||||| ||    
T  9040627 ataataatagtaaaatgggaagtggggttagcatcaactcggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcgg 9040528  T
Q  233 tttagattagtccggtt 249  Q
    |||||||| || |||||    
T  9040527 tttagattggttcggtt 9040511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 34760833 - 34760932
Alignment:
Q  189 ggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacctgacaatctcaaatactttttt 288  Q
    |||||||||||| ||||| |||||| | |||||||| |||| ||||||| || || ||||||| ||||||||||||||  ||||  ||| ||||||||||    
T  34760833 ggatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatactttttt 34760932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 25808310 - 25808363
Alignment:
Q  187 ttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagatt 240  Q
    |||||||||||||||||||| | |||||| ||||||| ||||| ||||||||||    
T  25808310 ttggatctcaaaatgaaaaaccgagaatcaaaccaaaaaagatcggtttagatt 25808363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 44223298 - 44223431
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    ||||||||||||||||  | ||||  |||| |||||| |||||| ||| ||||   ||||||| |||||||||| || ||| | |||||||| |||| ||    
T  44223298 ataatatttgtaaaataaggagtgtggttatcatcggattggttcatcggtttcacggatctcgaaatgaaaaatcatgaaccaaaccaaactagattgg 44223397  T
Q  233 tttagattagtccggttcggttttgaaccgaacc 266  Q
    ||| |||| || | | |||||||| ||| |||||    
T  44223398 tttcgattggttcagatcggttttaaactgaacc 44223431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 38607141 - 38607049
Alignment:
Q  173 ggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaac 265  Q
    |||| ||| ||||| ||||||||||||||||||| |||||| ||||||||||||| |  ||||||||| || ||||||||||||||| |||||    
T  38607141 ggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcgaac 38607049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 328
Target Start/End: Original strand, 3919846 - 3920021
Alignment:
Q  153 agtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcgg 252  Q
    |||| ||||| |||||||| |||| ||| ||| ||| ||||||||||| |||||  ||||| | |||||||| |||| ||||||| || || ||||||||    
T  3919846 agtgaagttagcatcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcgg 3919945  T
Q  253 ttttgaaccgaacctgacaatctcaaatacttttttgatttggtccgatttgaactttcggtttcatcggttttgt 328  Q
    ||||||||| ||||  ||||  || ||| |||||| | |||| | |  |||||| ||| |||||||| ||||||||    
T  3919946 ttttgaaccaaaccaaacaaagtcgaatgctttttcggtttgattcagtttgaattttaggtttcattggttttgt 3920021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 29109133 - 29109266
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    ||||||||  ||||||||||||    |||| ||||| ||||||| ||| ||| ||||||||||||||| ||||| | |||| | |||||||| |||| ||    
T  29109133 ataatattactaaaatgggaaggaaggttagcatcgatttggttcatcggttctttggatctcaaaattaaaaaccgagaaccaaaccaaactagattgg 29109232  T
Q  233 tttagattagtccggttcggttttgaaccgaacc 266  Q
    ||||| ||  | |||||||||||||||| |||||    
T  29109233 tttaggttgcttcggttcggttttgaactgaacc 29109266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 5526421 - 5526300
Alignment:
Q  143 taaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattag 242  Q
    ||||||||| ||||   ||| |||||||| |||| ||| ||| ||||||||||||||| |||||   |||| |||||||||| |||| ||||||| || |    
T  5526421 taaaatggggagtgagattagcatcggttcggttcatctgttctttggatctcaaaattaaaaactgagaaccgaaccaaactagatcggtttaggttgg 5526322  T
Q  243 tccggttcggttttgaaccgaac 265  Q
    | | |||| ||||||||||||||    
T  5526321 ttc-gttcagttttgaaccgaac 5526300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 30340586 - 30340479
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||||| ||||||| || |||||||||| | | ||||  ||| |||  ||| ||| ||||||||||||||||   |||||| ||||||||||||| ||    
T  30340586 ataatattagtaaaatagggagtggagttaccgttggttcagttcatcgatttcttgaatctcaaaatgaaaaactgagaatcaaaccaaacaagatcgg 30340487  T
Q  233 tttagatt 240  Q
     |||||||    
T  30340486 cttagatt 30340479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 330
Target Start/End: Original strand, 13852296 - 13852437
Alignment:
Q  189 ggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacctgacaatctcaaatactttttt 288  Q
    ||||||||||||||||||  | ||| | |||||||| |||| ||||| |||| ||  || |||||||  ||||||| |  ||||  ||| ||| ||||||    
T  13852296 ggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaaacaaagtcagatattttttt 13852395  T
Q  289 gatttggtccgatttgaactttcggtttcatcggttttgtcc 330  Q
    |||||| | | ||||| ||||||| |||| | ||||||||||    
T  13852396 gatttgattcaatttggactttcgatttcgttggttttgtcc 13852437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 28199875 - 28199815
Alignment:
Q  49 gatggaagaaagtgaattgatcaaggagtattttatgtcggacttttaattttgggcctaat 110  Q
    ||||| ||||||||||| ||| |||||||||| ||||| |||| ||||||||| ||||||||    
T  28199875 gatgggagaaagtgaatggattaaggagtattatatgttggac-tttaattttaggcctaat 28199815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 289
Target Start/End: Original strand, 44018948 - 44019064
Alignment:
Q  168 ggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagataggtttagattagtccggttcggttttgaaccgaacct 267  Q
    |||| |||| ||||||||||||||||||||||| ||||  | |||| |||||||||| | || ||||||  ||     |||||||||||||||| ||||     
T  44018948 ggttcggttcatcagttttttggatctcaaaattaaaatccgagaaccgaaccaaactaaatcggtttaagtt-----ggttcggttttgaaccaaacca 44019042  T
Q  268 gacaatctcaaatacttttttg 289  Q
     ||||  || ||||||||||||    
T  44019043 aacaaagtccaatacttttttg 44019064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 13961 - 13822
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||| | |||||||||| ||||  |||| |||||||| | || ||| |||| |||||||||||||||||||| | | || | ||||||| |||||  |    
T  13961 ataataatagtaaaatggggagtgaggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaataagatcag 13862  T
Q  233 tttagattagtccggttcggttttgaaccgaacctgacaa 272  Q
    |||||||| || ||||||| |||||||| ||||| |||||    
T  13861 tttagattggttcggttcgattttgaactgaaccagacaa 13822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 17770425 - 17770347
Alignment:
Q  134 taatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaa 213  Q
    ||||||| |||||||||||||||| |||| ||||||||||||| |||  || ||||||||||||| | ||||| ||||||    
T  17770425 taatattagtaaaatgggaagtgg-gttagcatcggtttggttcatctattctttggatctcaaatttaaaaaccaagaa 17770347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 39786277 - 39786193
Alignment:
Q  19 aggacttgataatgtcattaataaagtgaagatggaagaaagtgaattgatcaaggagtattttatgtcggacttttaattttggg 104  Q
    ||||||||| ||||||||||||||||||| ||||| |||||| |||| |||  | || |||||||||||  || ||||||||||||    
T  39786277 aggacttgacaatgtcattaataaagtgatgatgggagaaagcgaatggattcatgactattttatgtcacac-tttaattttggg 39786193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 41091972 - 41092105
Alignment:
Q  133 ataatatttgtaaaatgggaagtggagttaacatcggtttggtttatcagttttttggatctcaaaatgaaaaaacaagaatcgaaccaaacaagatagg 232  Q
    |||||||  |||||||||| | ||||||||||||| ||| |||| |||  ||  |||||||||||| | ||||| ||||||  ||||||||||   | ||    
T  41091972 ataatataagtaaaatggggaatggagttaacatcagttcggttcatcgattccttggatctcaaagtaaaaaaccaagaactgaaccaaacagtgtcgg 41092071  T
Q  233 tttagattagtccggttcggttttgaaccgaacc 266  Q
    |||||||| ||  |||||| |||||| |||||||    
T  41092072 tttagattggtttggttcgattttgatccgaacc 41092105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 811 - 901
Alignment:
Q  19 aggacttgataatgtcattaataaagtgaagatggaagaaagtgaattgatcaaggagtattttatgtcggacttttaattttgggcctaat 110  Q
    ||||||||||||||||||||||||||||| ||| |   |||||||||  || ||  ||||| |||||| ||| |||||||||| ||||||||    
T  811 aggacttgataatgtcattaataaagtgatgattggttaaagtgaatgaattaaaaagtatattatgttgga-ttttaattttaggcctaat 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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