View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_35 (Length: 321)
Name: NF20367_low_35
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 26169956 - 26170095
Alignment:
| Q |
1 |
ttaaatcttgtacccaaaactatggtgaaaaaatgaattataagtagagttttttacctcattgtttgaaagtaccaaaagaggggttacttagaaagtt |
100 |
Q |
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| T |
26169956 |
ttaaatcttgtacccaaaactgtggtgaaaaaatgacttataagtagagttttttacctcattgtttgaaagtaccaaaagaggggttacttagaaagtt |
26170055 |
T |
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| Q |
101 |
taaaggtgaagtgtagtgccttttgggtgtgtgactaggg |
140 |
Q |
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| T |
26170056 |
taaaggtgaagtgtggtgccttttgggtgtgtgactaggg |
26170095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 136 - 304
Target Start/End: Original strand, 26170117 - 26170283
Alignment:
| Q |
136 |
tagggaacacaaagagaagatcatgattcttgtgttgaatgcttcttgtggagttcttgaatnnnnnnnnnnnnnncggcattaccaaaagagcatatat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26170117 |
tagggaacacaaagagaagatcatgattcttgtgttgaatgcttcttgtggagttcttgaatgagagagagaga--cggcattaccaaaagagcatatat |
26170214 |
T |
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| Q |
236 |
ttaaggaaacttaagagctaggagtggagcttttacgtgagaaaatggagttggaaaacacactctaaa |
304 |
Q |
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| T |
26170215 |
ttaaagaaatttaagagctaggagtggagcttttacgtgagaaaatggagttggaaaacacactctaaa |
26170283 |
T |
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