View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_36 (Length: 318)
Name: NF20367_low_36
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 7553441 - 7553749
Alignment:
| Q |
1 |
taaaagaattttaaagtatattagtagtttttatacaagttaatgtagcatgtatgccaatatggtggaatatttttggcctttaaaatgttgcaaaaga |
100 |
Q |
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| T |
7553441 |
taaaagagttttaaagtatattagtagtttttatacaagttaatgtagcatgtatgccaatatggtggaataattttggcctttaaaatgttgcaaaaga |
7553540 |
T |
|
| Q |
101 |
tgcacagaagaaactggcagaactgtagttagagattttgaaagcatgtagtcatgtggactccttttatttcaaaagcctgtcagctataaaaatgagg |
200 |
Q |
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| T |
7553541 |
tgcacagaagaaactggcagaactgtagttagagattttgaaagcatgtagtcatgtggactccttttatttcaaaagcctgttagctataaaaatgagg |
7553640 |
T |
|
| Q |
201 |
tgctaatttcttgagtattatcatatgagggctgctaaaatgtagaacttacttttcctaaaataattannnnnnnatcgtaaagctgtggagaattata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7553641 |
tgctaatttcttgagtattatcatatgagggctgctaaaatgtagaacttacttttcctaaaataattatttttttatcgtaaagctgtggagaattata |
7553740 |
T |
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| Q |
301 |
agttgatgc |
309 |
Q |
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| T |
7553741 |
agttgatgc |
7553749 |
T |
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