View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_38 (Length: 311)
Name: NF20367_low_38
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 11980267 - 11979986
Alignment:
| Q |
14 |
agcagagaagtcaagtgtattaggataataccatcttttcatataagggtcatacatggcttcataatcataatctccaaaagttgtataaaagcatgga |
113 |
Q |
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| T |
11980267 |
agcagagaattcaagtgtattaggataataccatcttttcatataagggtcatacatggcttcataatcataatctccaaaagttgtataaaagcatgga |
11980168 |
T |
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| Q |
114 |
ttttcctgtgagacttgagcacaaaactgagaaaaacgctgtgagcttatcaagttattccattgctgacatacagcgcgaaagcgaataattgtgacaa |
213 |
Q |
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| T |
11980167 |
ttttcctgtgagacttgagcacaaaactgagaaaaactctgtgagcttatcaagttattccattgctgacatacagcgcggaagcgaataattgtgacaa |
11980068 |
T |
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| Q |
214 |
tgggaagtcgtgcaagaacattctcaaatagatcttcaggaaatttttcccaaatttgtggtttcataacttgagtcaagtg |
295 |
Q |
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| T |
11980067 |
tgggaagtcgtgcaagaacattctcaaatagatcttcaggaaatttttcccaaatttgtggtttcataacttcagtcaagtg |
11979986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 291
Target Start/End: Complemental strand, 11954059 - 11953801
Alignment:
| Q |
33 |
ttaggataataccatcttttcatataagggtcatacatggcttcataatcataatctccaaaagttgtataaaagcatggattttcctgtgagacttgag |
132 |
Q |
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| T |
11954059 |
ttaggattataccatcttttcatacatgggtcataaatggttttgtaattgtaatgtccatgagatatgcaaaaccatggatttacttgtgagactttag |
11953960 |
T |
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| Q |
133 |
cacaaaactgagaaaaacgctgtgagcttatcaagttattccattgctgacatacagcgcgaaagcgaataattgtgacaatgggaagtcgtgcaagaac |
232 |
Q |
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| T |
11953959 |
aacattgctgagaaaaactttgagaggttatcaaattattccattgctggcatacagtacggaaacatataattttggccatgggaagtcgtgcaagcac |
11953860 |
T |
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| Q |
233 |
attctcaaatagatcttcaggaaatttttcccaaatttgtggtttcataacttgagtca |
291 |
Q |
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| T |
11953859 |
aacctcaaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtca |
11953801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 34751470 - 34751422
Alignment:
| Q |
234 |
ttctcaaatagatcttcaggaaatttttcccaaatttgtggtttcataa |
282 |
Q |
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| T |
34751470 |
ttctcaaatagatcttcaggaaatttttcccaaatttggggtttcataa |
34751422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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