View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_40 (Length: 304)
Name: NF20367_low_40
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6863324 - 6863197
Alignment:
| Q |
1 |
cacatagcagcaacagtattcaacattcttggacaaacaagagaggcactagagatcatgactctaagtatatgacataaaagaaatgcagatcatggat |
100 |
Q |
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| T |
6863324 |
cacatagcagcaacagtattcaacattcttggacaaacaagagaggcactagaggtcatgactctaagtatatgacataaaagaaatgcagatcatggat |
6863225 |
T |
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| Q |
101 |
ttgacatatactattactaattataatg |
128 |
Q |
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| T |
6863224 |
ttgacatatactattactaattataatg |
6863197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 6862826 - 6862709
Alignment:
| Q |
187 |
catctatcaacatcttcaacttttgatatttgtggtggatttgagacttgcacatcgcaaatatcatagaatgaagatgtggcaggtggcaaaatcagtg |
286 |
Q |
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| T |
6862826 |
catctatcaacttcttcaacttttgatatttgaggtggatttgagacttgcacatcgcaaatatcatagaatgaagatgtggcaggtggcaaaatcagtg |
6862727 |
T |
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| Q |
287 |
tagccttgtacatagaga |
304 |
Q |
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|||| ||||||||||||| |
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| T |
6862726 |
tagctttgtacatagaga |
6862709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49148948 - 49149007
Alignment:
| Q |
1 |
cacatagcagcaacagtattcaacattcttggacaaacaagagaggcactagagatcatg |
60 |
Q |
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| T |
49148948 |
cacatagcagcaacagtgttcaacatacttggacagacaagagaggcattagaggtcatg |
49149007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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