View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_42 (Length: 297)
Name: NF20367_low_42
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 27537320 - 27537597
Alignment:
| Q |
16 |
attgcaaatgaaaaatgtacgtggacattaaacaccaatccagaattttagaaaggcgagggatctaacaatgtatacctattgaaccccgcccttataa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27537320 |
attgcaaatgaaaaatgtacgtggacattaaacaccaatccagaattttagaaaggcgagggatctaaccatgtatacctattgaaccccgcccttataa |
27537419 |
T |
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| Q |
116 |
gtcagtattttagctatttttgtattaacagtgcccttagt--------------tatatattgataaggcagttggtatgtgtggtaaactatcggtta |
201 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27537420 |
gtcagtattttagctatttttgtattaacagtgccattagttatatatatatatatatatattgataaggcagttggtatgtgtggtaaactatcggtta |
27537519 |
T |
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| Q |
202 |
ttttctgtagtctcggtggcaggtcgtatagaaaaaaggagagggatgaataaaatgttgtttaattcatgtataggt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27537520 |
ttttctgtagtctcggtggcaggtcgtatagaaaaaaggagagggatgaataaaatgttgtttaattcatgtataggt |
27537597 |
T |
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