View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_46 (Length: 294)

Name: NF20367_low_46
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_46
NF20367_low_46
[»] chr8 (10 HSPs)
chr8 (171-276)||(11922559-11922665)
chr8 (176-276)||(11947395-11947497)
chr8 (16-62)||(11922404-11922450)
chr8 (16-62)||(11947612-11947658)
chr8 (234-276)||(31893201-31893243)
chr8 (241-274)||(12639355-12639388)
chr8 (234-270)||(4455356-4455392)
chr8 (234-270)||(18656633-18656669)
chr8 (234-270)||(39375180-39375216)
chr8 (234-270)||(42063528-42063564)
[»] chr1 (12 HSPs)
chr1 (214-270)||(51727102-51727158)
chr1 (234-272)||(3794211-3794249)
chr1 (234-270)||(46545446-46545482)
chr1 (234-276)||(3014167-3014209)
chr1 (234-276)||(3252292-3252334)
chr1 (199-269)||(19554196-19554266)
chr1 (216-265)||(4331964-4332013)
chr1 (199-268)||(50358969-50359038)
chr1 (234-270)||(4225081-4225117)
chr1 (234-270)||(11191411-11191447)
chr1 (205-277)||(17857918-17857990)
chr1 (234-270)||(42866344-42866380)
[»] chr7 (5 HSPs)
chr7 (234-276)||(33610656-33610698)
chr7 (234-270)||(25069364-25069400)
chr7 (234-270)||(10198373-10198409)
chr7 (234-274)||(24096717-24096757)
chr7 (234-270)||(44605933-44605969)
[»] chr4 (6 HSPs)
chr4 (234-276)||(8132857-8132899)
chr4 (199-276)||(387850-387927)
chr4 (216-276)||(54822095-54822155)
chr4 (199-268)||(293553-293622)
chr4 (234-270)||(1936508-1936544)
chr4 (234-270)||(25232672-25232708)
[»] chr3 (4 HSPs)
chr3 (234-276)||(42907835-42907877)
chr3 (234-276)||(53351237-53351279)
chr3 (234-270)||(44832469-44832505)
chr3 (234-270)||(45158526-45158562)
[»] scaffold0242 (1 HSPs)
scaffold0242 (241-274)||(17849-17882)
[»] chr5 (3 HSPs)
chr5 (234-273)||(26166208-26166247)
chr5 (234-276)||(13956996-13957038)
chr5 (228-268)||(32383891-32383931)
[»] chr2 (2 HSPs)
chr2 (234-276)||(6065506-6065548)
chr2 (234-270)||(35305297-35305333)
[»] scaffold0131 (1 HSPs)
scaffold0131 (234-270)||(7874-7910)
[»] scaffold0116 (1 HSPs)
scaffold0116 (234-270)||(7905-7941)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 11922559 - 11922665
Alignment:
Q  171 cgtaattttaaaaactagatcggtcaattc-ggtaaggtcactagatcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaac 269  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11922559 cgtagttttaaaaattagatcggtcaattccggtaaggtcactagatcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaat 11922658  T
Q  270 cagatta 276  Q
    |||||||    
T  11922659 cagatta 11922665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 11947497 - 11947395
Alignment:
Q  176 ttttaaaaactagatcggtcaattcggtaaggtcactagatcactgagtcgttgattcaaccacggagt--cattggttgaaccgcatgactgaaccaga 273  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  11947497 ttttaaaaactagatcggtcaatccggtaaggtcactagatcactgagtcgttgattcaaccacggagttatattggttgaaccgcatgactgaaccaga 11947398  T
Q  274 tta 276  Q
    |||    
T  11947397 tta 11947395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 11922404 - 11922450
Alignment:
Q  16 atgagatcaaatttactacaataccttcaataaatgtaaatgttaac 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11922404 atgagatcaaatttactacaataccttcaataaatgtaaatgttaac 11922450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 11947658 - 11947612
Alignment:
Q  16 atgagatcaaatttactacaataccttcaataaatgtaaatgttaac 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11947658 atgagatcaaatttactacaataccttcaataaatgtaaatgttaac 11947612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 31893243 - 31893201
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| |||||| ||||||||||||||||||||||| |||||    
T  31893243 aaccactgagtcactggttgaaccgcatgactgaaccggatta 31893201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 12639388 - 12639355
Alignment:
Q  241 gagtcattggttgaaccgcatgactgaaccagat 274  Q
    ||||||||||||||||||||||||| ||||||||    
T  12639388 gagtcattggttgaaccgcatgacttaaccagat 12639355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 4455392 - 4455356
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  4455392 aaccactgagtcattggtcgaaccgcatgactgaacc 4455356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 18656669 - 18656633
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  18656669 aaccactgagtcattggtcgaaccgcatgactgaacc 18656633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 39375180 - 39375216
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  39375180 aaccactgagtcattggtcgaaccgcatgactgaacc 39375216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 42063528 - 42063564
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  42063528 aaccactgagtcattggtcgaaccgcatgactgaacc 42063564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 51727102 - 51727158
Alignment:
Q  214 gatcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||||||||| |||||  |||||  ||||||||||||||||||||||||||||||    
T  51727102 gatcactgagtcattgatcgaaccattgagtcattggttgaaccgcatgactgaacc 51727158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 3794211 - 3794249
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccag 272  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  3794211 aaccactgagtcattggttgaaccgcatgactgaaccag 3794249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 46545446 - 46545482
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||||||||||||||||||||||    
T  46545446 aaccactgagtcattggttgaaccgcatgactgaacc 46545482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 3014209 - 3014167
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| ||||||||||||||||| |||||||||||| |||||    
T  3014209 aaccactgagtcattggttgaaccacatgactgaaccggatta 3014167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 3252292 - 3252334
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| |||||| ||||||||||||||||||||||| |||||    
T  3252292 aaccactgagtcactggttgaaccgcatgactgaaccggatta 3252334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 19554266 - 19554196
Alignment:
Q  199 tcggtaaggtcactagatcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaac 269  Q
    ||||| |||| ||| |||||||||||| |||||  |||||| || |||||||| |||||| ||||||||||    
T  19554266 tcggtgaggttactggatcactgagtcattgatcgaaccactgaatcattggtcgaaccgtatgactgaac 19554196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 4332013 - 4331964
Alignment:
Q  216 tcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgact 265  Q
    ||||||| |||||| || |||||| | |||||||||||||||||||||||    
T  4332013 tcactgattcgttggttgaaccactgggtcattggttgaaccgcatgact 4331964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 50359038 - 50358969
Alignment:
Q  199 tcggtaaggtcactagatcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaa 268  Q
    ||||| |||| ||||| |||||||||| ||| |  |||||| || |||||||| ||||||||||||||||    
T  50359038 tcggtgaggttactaggtcactgagtcattggtcgaaccactgaatcattggtcgaaccgcatgactgaa 50358969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 4225117 - 4225081
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  4225117 aaccactgagtcattggttgaaccgcataactgaacc 4225081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 11191447 - 11191411
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  11191447 aaccactgagtcattggttgaaccacatgactgaacc 11191411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 17857918 - 17857990
Alignment:
Q  205 aggtcactagatcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaaccagattat 277  Q
    |||||||| | | ||||||||  || |||||||||   ||||||||||||||  |||||||||||||||||||    
T  17857918 aggtcactgggttactgagtcaatggttcaaccactaggtcattggttgaactacatgactgaaccagattat 17857990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 42866344 - 42866380
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  42866344 aaccactgagtcattggtcgaaccgcatgactgaacc 42866380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 33610656 - 33610698
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  33610656 aaccactgagtcattggttgaaccgcatgactgaatcagatta 33610698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 25069364 - 25069400
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25069364 aaccactgagtcattggttgaaccgcatgactgaacc 25069400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 10198373 - 10198409
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  10198373 aaccactgagtcattggtcgaaccgcatgactgaacc 10198409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 24096757 - 24096717
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagat 274  Q
    |||||| ||||||||||| |||||||||| |||||||||||    
T  24096757 aaccactgagtcattggtcgaaccgcatgtctgaaccagat 24096717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 44605969 - 44605933
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  44605969 aaccactgagtcattggtcgaaccgcatgactgaacc 44605933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 8132857 - 8132899
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  8132857 aaccactgagtcattggttgaaccgcatgactgaaccggatta 8132899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 387927 - 387850
Alignment:
Q  199 tcggtaaggtcactagatcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||||||||||| | | |||||||||||| || |||||| |  ||| ||||||||| |||||||| ||||||||||    
T  387927 tcggtaaggtcactgggttactgagtcgttggttaaaccactggatcaatggttgaactgcatgactaaaccagatta 387850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 54822095 - 54822155
Alignment:
Q  216 tcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    ||||||||||  ||||  |||||| |||||| ||||||||||||||||||||| |||||||    
T  54822095 tcactgagtcaatgatcgaaccactgagtcactggttgaaccgcatgactgaaacagatta 54822155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 293622 - 293553
Alignment:
Q  199 tcggtaaggtcactagatcactgagtcgttgattcaaccacggagtcattggttgaaccgcatgactgaa 268  Q
    ||||| |||||||| | |||||||||||||| |  |||||  | |||| |||||||||||||||||||||    
T  293622 tcggtgaggtcactgggtcactgagtcgttggtcgaaccattgggtcactggttgaaccgcatgactgaa 293553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 1936544 - 1936508
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  1936544 aaccactgagtcattggtcgaaccgcatgactgaacc 1936508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 25232708 - 25232672
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  25232708 aaccactgagtcattggtcgaaccgcatgactgaacc 25232672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 42907835 - 42907877
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  42907835 aaccactgagtcattggttgaaccgcatgactgaaccggatta 42907877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 53351237 - 53351279
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| ||||| |||||||||||||||||||||||| |||||    
T  53351237 aaccactgagtcgttggttgaaccgcatgactgaaccggatta 53351279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 44832469 - 44832505
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  44832469 aaccaccgagtcattggtcgaaccgcatgactgaacc 44832505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 45158526 - 45158562
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  45158526 aaccaccgagtcattggtcgaaccgcatgactgaacc 45158562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 17882 - 17849
Alignment:
Q  241 gagtcattggttgaaccgcatgactgaaccagat 274  Q
    ||||||||||||||||||||||||||||||||||    
T  17882 gagtcattggttgaaccgcatgactgaaccagat 17849  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 26166247 - 26166208
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccaga 273  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  26166247 aaccactgagtcattggtcgaaccgcatgactgaaccaga 26166208  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 13956996 - 13957038
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| |||||| ||||||||||||||||||||||| |||||    
T  13956996 aaccactgagtcactggttgaaccgcatgactgaaccggatta 13957038  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 32383931 - 32383891
Alignment:
Q  228 tgattcaaccacggagtcattggttgaaccgcatgactgaa 268  Q
    ||||| |||||| | ||||||||||||||||||||||||||    
T  32383931 tgattgaaccactgtgtcattggttgaaccgcatgactgaa 32383891  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 6065548 - 6065506
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaaccagatta 276  Q
    |||||| | |||||||||||||||||||||||||| |||||||    
T  6065548 aaccactgggtcattggttgaaccgcatgactgaatcagatta 6065506  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 35305333 - 35305297
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  35305333 aaccactgagtcattggtcgaaccgcatgactgaacc 35305297  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 7910 - 7874
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  7910 aaccactgagtcattggttgaatcgcatgactgaacc 7874  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 7905 - 7941
Alignment:
Q  234 aaccacggagtcattggttgaaccgcatgactgaacc 270  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  7905 aaccactgagtcgttggttgaaccgcatgactgaacc 7941  T

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