View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_47 (Length: 273)

Name: NF20367_low_47
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_47
NF20367_low_47
[»] chr3 (11 HSPs)
chr3 (19-254)||(7032471-7032706)
chr3 (40-158)||(7312962-7313080)
chr3 (40-158)||(34332651-34332769)
chr3 (47-158)||(10323407-10323518)
chr3 (40-158)||(2364463-2364581)
chr3 (40-158)||(19920065-19920183)
chr3 (40-133)||(40930389-40930482)
chr3 (68-157)||(963000-963089)
chr3 (68-127)||(3141066-3141125)
chr3 (65-126)||(48569907-48569968)
chr3 (68-148)||(2756056-2756136)
[»] chr5 (13 HSPs)
chr5 (40-158)||(31641697-31641815)
chr5 (40-158)||(28535511-28535629)
chr5 (40-158)||(35983627-35983745)
chr5 (40-158)||(30732150-30732268)
chr5 (40-158)||(12825385-12825503)
chr5 (40-158)||(27116997-27117115)
chr5 (40-158)||(42513906-42514024)
chr5 (43-158)||(23238573-23238688)
chr5 (19-158)||(42928296-42928435)
chr5 (68-148)||(24408142-24408222)
chr5 (38-126)||(27795667-27795755)
chr5 (68-135)||(18089620-18089687)
chr5 (68-127)||(33169872-33169931)
[»] chr7 (8 HSPs)
chr7 (40-158)||(17720821-17720939)
chr7 (43-158)||(11277088-11277203)
chr7 (40-158)||(47877169-47877287)
chr7 (19-158)||(235273-235412)
chr7 (40-158)||(4937964-4938082)
chr7 (43-158)||(29968163-29968278)
chr7 (60-154)||(37919750-37919844)
chr7 (97-135)||(27854301-27854339)
[»] chr8 (9 HSPs)
chr8 (40-158)||(9922787-9922905)
chr8 (40-158)||(13396574-13396692)
chr8 (40-158)||(7924572-7924690)
chr8 (40-158)||(8299989-8300107)
chr8 (40-154)||(41665209-41665323)
chr8 (43-158)||(32266751-32266866)
chr8 (40-158)||(172289-172407)
chr8 (38-126)||(13879355-13879443)
chr8 (65-114)||(25090598-25090647)
[»] chr6 (7 HSPs)
chr6 (40-158)||(21168385-21168503)
chr6 (44-156)||(2553827-2553939)
chr6 (79-158)||(24767265-24767344)
chr6 (68-148)||(13937914-13937994)
chr6 (77-127)||(18682401-18682451)
chr6 (97-138)||(33185678-33185719)
chr6 (65-111)||(14372874-14372920)
[»] chr4 (11 HSPs)
chr4 (40-158)||(15740407-15740525)
chr4 (40-158)||(19755453-19755571)
chr4 (40-158)||(19784235-19784353)
chr4 (40-158)||(47685731-47685849)
chr4 (40-158)||(23642427-23642545)
chr4 (40-158)||(47418990-47419108)
chr4 (40-158)||(1828376-1828494)
chr4 (38-126)||(54483027-54483115)
chr4 (68-127)||(46145889-46145948)
chr4 (80-123)||(48312321-48312364)
chr4 (65-114)||(2821917-2821966)
[»] chr1 (6 HSPs)
chr1 (40-158)||(11908941-11909059)
chr1 (40-158)||(6050789-6050907)
chr1 (40-158)||(35541235-35541353)
chr1 (71-157)||(2491429-2491515)
chr1 (68-120)||(31779477-31779529)
chr1 (97-157)||(22191618-22191678)
[»] scaffold0472 (1 HSPs)
scaffold0472 (43-158)||(3441-3556)
[»] scaffold0034 (1 HSPs)
scaffold0034 (40-158)||(105679-105797)
[»] chr2 (2 HSPs)
chr2 (40-158)||(41207202-41207320)
chr2 (65-126)||(40176879-40176940)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 7032471 - 7032706
Alignment:
Q  19 atacccaccgtccatatttaataaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactct 118  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7032471 atacccaccgtccagaattaataaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactct 7032570  T
Q  119 tcctcccaagtccacaaacgcctacgccaccgcaacgccttctcaaaaactcaactctatcaaaatcaattttcacaaccgttaaaaccaaacacacgct 218  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7032571 tcctcccaagcccacaaacgcctacgccaccgcaacaccttctcaaaaactcaactctatcaaaatcaattttcaccaccgttaaaaccaaacacacgct 7032670  T
Q  219 atataaaggagagaatgagtggttaagagagataag 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  7032671 atataaaggagagaatgagtggttaagagagataag 7032706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 7312962 - 7313080
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  7312962 taaccagagccatctgtctatcactgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 7313061  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  7313062 ctacgccacctcaacgcct 7313080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 34332769 - 34332651
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||||| |||  ||| ||||||||||| | |||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||| |||    
T  34332769 taaccaaagccatctgtctgacactgattcctgcaaagaaactgttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgc 34332670  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||||||||||||    
T  34332669 ctacgccaccgcaacgcct 34332651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 10323518 - 10323407
Alignment:
Q  47 agccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgcc 146  Q
    ||||||||||||| ||| || |||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| ||||||||||    
T  10323518 agccatctatctaacactgaatcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgcc 10323419  T
Q  147 accgcaacgcct 158  Q
    ||||||||||||    
T  10323418 accgcaacgcct 10323407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 2364463 - 2364581
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  2364463 taaccagagccatctgtctaacactgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 2364562  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  2364563 ctacgccacctcaacgcct 2364581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 19920183 - 19920065
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| | |    
T  19920183 taaccagagccatctgtctatcactgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaacctc 19920084  T
Q  140 ctacgccaccgcaacgcct 158  Q
    ||||| |||| ||| ||||    
T  19920083 ctacgacacctcaatgcct 19920065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 40930482 - 40930389
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccac 133  Q
    ||||||||||||||||| | |||| ||||| ||||| | |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  40930482 taaccaaagccatctatttgtcactgattcttgcaaagaaactgttagtaataaaaccctacactcctctaccaactcttcctcccaagcccac 40930389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 963089 - 963000
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgccaccgcaacgcc 157  Q
    |||||||| |||||||| ||||||||  ||||| ||||||||||||| ||||||||||||  |||||| || | ||||||| || |||||    
T  963089 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaattcttcctcccaaacccacaagcggcgacgccactgccacgcc 963000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 3141066 - 3141125
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaa 127  Q
    |||||||| |||||||| |||||||   ||||| ||||||||||||||||||||||||||    
T  3141066 tcctgcaaagtaactgtaagtaatagttccctacactcctctaccaactcttcctcccaa 3141125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 48569968 - 48569907
Alignment:
Q  65 gattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctccca 126  Q
    ||||||||||| |  |||||||||| |||||||||| ||||||||||||| || ||||||||    
T  48569968 gattcctgcaaagagactgttagtagtaaagccctacactcctctaccaagtcctcctccca 48569907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 2756056 - 2756136
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgccac 148  Q
    |||||||| |||| ||| |||||||   ||||| |||||||||| |||||||||||||||  |||||| || | |||||||    
T  2756056 tcctgcaaagtaagtgtaagtaatagttccctacactcctctacaaactcttcctcccaaacccacaagcggcgacgccac 2756136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 31641697 - 31641815
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  31641697 taaccaaatccatctatctgtcactgattcctgcaatgaaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagcccacaaccgc 31641796  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  31641797 ctacgccacctcaacgcct 31641815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 28535629 - 28535511
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |    
T  28535629 taaccaaagccatctatctgtcattgattcctgcaatgaaactgttagtaataaagccctaaactcctctaccaactcttcctctcaagcccacaaccac 28535530  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  28535529 ctacgccacctcaacgcct 28535511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 35983745 - 35983627
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||||||| |||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||    
T  35983745 taaccaaagctatctatctgtcactgattcctgtaatgaaactgttagtaataaagccctaaactcctctaccaactcctcctcctaagcccacaaccgc 35983646  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  35983645 ctacgccacctcaacgcct 35983627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 30732268 - 30732150
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  30732268 taaccagagccatctgtctatcactgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 30732169  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  30732168 ctacgccacctcaacgcct 30732150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 12825385 - 12825503
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||| || ||||||| |||||| |||    
T  12825385 taaccagagccatctgtctatcactgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcatcccaagcccacaaccgc 12825484  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  12825485 ctacgccacctcaacgcct 12825503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 27117115 - 27116997
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||| | |||||||| | |||||| |||    
T  27117115 taaccatagccatctgtctatcactgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaacccctcctcccaggcccacaaccgc 27117016  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  27117015 ctacgccacctcaacgcct 27116997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 42513906 - 42514024
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| || |||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  42513906 taaccagagccatctgtctaacactgagtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 42514005  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  42514006 ctacgccacctcaacgcct 42514024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 23238573 - 23238688
Alignment:
Q  43 ccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgccta 142  Q
    |||||||||||| ||| |||| ||||||||||| | ||||||||| |||||||||||| |||||||||||||||| |||||||  | |||||| | ||||    
T  23238573 ccaaagccatctgtctgtcactgattcctgcaaagaaactgttagcaataaagccctacactcctctaccaactcctcctccctggcccacaacctccta 23238672  T
Q  143 cgccaccgcaacgcct 158  Q
    ||||||||||||||||    
T  23238673 cgccaccgcaacgcct 23238688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 42928296 - 42928435
Alignment:
Q  19 atacccaccgtccatatttaataaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactct 118  Q
    ||||||||| |||  ||||  |||||| | |||||||||| |||| |||||||| ||   ||| || ||||||||| ||||| |||||||||||||||||    
T  42928296 atacccaccatcctgatttggtaaccacaaccatctatctgtcactgattcctgtaaaaaaacggtaagtaataaaaccctacactcctctaccaactct 42928395  T
Q  119 tcctcccaagtccacaaacgcctacgccaccgcaacgcct 158  Q
    |||||||||| |||||| |||| ||||||| |||||||||    
T  42928396 tcctcccaagcccacaaccgccgacgccactgcaacgcct 42928435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 24408142 - 24408222
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgccac 148  Q
    |||||||| |||||||| |||||||   ||||| ||||||||||||||||||||||||||| |||||| || | |||||||    
T  24408142 tcctgcaaagtaactgtaagtaatagttccctacactcctctaccaactcttcctcccaagcccacaagcgacgacgccac 24408222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 27795667 - 27795755
Alignment:
Q  38 aataaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctccca 126  Q
    |||||||| | |||||||||  | || ||||||| ||| | |||||||||||||||||||||| ||||||||||||| || ||||||||    
T  27795667 aataaccacacccatctatcagtaacggattcctccaaagaaactgttagtaataaagccctacactcctctaccaagtcctcctccca 27795755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 18089687 - 18089620
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaa 135  Q
    ||||||||||||||||| ||||| | | ||||| ||||||||| ||||| ||||||||||| ||||||    
T  18089687 tcctgcaatgtaactgtaagtaaaagatccctacactcctctatcaacttttcctcccaagcccacaa 18089620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 33169872 - 33169931
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaa 127  Q
    |||||||| |||||||| ||||||||  ||||| |||||||||||||||| |||||||||    
T  33169872 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaactcgtcctcccaa 33169931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 17720821 - 17720939
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||    
T  17720821 taaccaaatccatctatctgtcactgattcctgcaatgaaactgttagtaataaagccntaaactcctctaccaactcttcctcccaagcccacaaccgc 17720920  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  17720921 ctacgccacctcaacgcct 17720939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 11277203 - 11277088
Alignment:
Q  43 ccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgccta 142  Q
    |||||||||||| ||| |||| ||||||||||| | ||||||||| |||||||||||| |||||||||||||||| |||||||||| |||||| ||||||    
T  11277203 ccaaagccatctgtctgtcactgattcctgcaaagaaactgttagcaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgccta 11277104  T
Q  143 cgccaccgcaacgcct 158  Q
    ||||||||||||||||    
T  11277103 cgccaccgcaacgcct 11277088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 47877169 - 47877287
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||| ||||| ||| |||| ||||||||||| | |||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||| |||    
T  47877169 taaccaaagtcatctgtctgtcactgattcctgcaaggaaactgttagtaataaaaccccacactcctctaccaactcttcctcccaagcccacaaccgc 47877268  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||||||||||||    
T  47877269 ctacgccaccgcaacgcct 47877287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 235412 - 235273
Alignment:
Q  19 atacccaccgtccatatttaataaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactct 118  Q
    ||||||||| |||  ||||  ||||||||| ||||||||| |||| |||||||| || | |||||||||||||||| ||||| ||||||||||||||| |    
T  235412 atacccaccatcctgatttggtaaccaaagtcatctatctgtcactgattcctgtaaggaaactgttagtaataaaaccctacactcctctaccaacttt 235313  T
Q  119 tcctcccaagtccacaaacgcctacgccaccgcaacgcct 158  Q
    |||||||||| |||||| |||  |||||||||||||||||    
T  235312 tcctcccaagcccacaatcgctgacgccaccgcaacgcct 235273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 4938082 - 4937964
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| || |||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  4938082 taaccagagccatctgtctaacactgagtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 4937983  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  4937982 ctacgccacctcaacgcct 4937964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 29968163 - 29968278
Alignment:
Q  43 ccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgccta 142  Q
    |||||||||||| ||| |||| ||||||||||| | ||||||||| |||||||||||| ||||||||||||| || ||||| |||| ||| || | ||||    
T  29968163 ccaaagccatctgtctgtcactgattcctgcaaagaaactgttagcaataaagccctacactcctctaccaattcctcctctcaagcccataacctccta 29968262  T
Q  143 cgccaccgcaacgcct 158  Q
    ||||||||||||||||    
T  29968263 cgccaccgcaacgcct 29968278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 37919750 - 37919844
Alignment:
Q  60 tcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgccaccgcaac 154  Q
    |||| ||||||||||| | |||||||||||||||| | ||| |||||||||||||||  |||||||||| |||||| ||||||||||||||||||    
T  37919750 tcactgattcctgcaaagaaactgttagtaataaaactctacactcctctaccaacttctcctcccaagcccacaaccgcctacgccaccgcaac 37919844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 27854339 - 27854301
Alignment:
Q  97 cctaaactcctctaccaactcttcctcccaagtccacaa 135  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  27854339 cctaagctcctctaccaactcttcctcccaagcccacaa 27854301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 9922787 - 9922905
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||    
T  9922787 taaccaaatccatctatctgtcactgattcctgcaatgaaactgttagtaataaagccctagactcctctaccaactcttcctcccaagcccacaaccgc 9922886  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  9922887 ctacgccacctcaacgcct 9922905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 13396574 - 13396692
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||||| ||| |||| ||||||||||| | || ||||||||||||| ||||| |||||||||||||||| |||||||||| |||||| |||    
T  13396574 taaccaaagccatctgtctgtcactgattcctgcaaagaaattgttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgc 13396673  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||||||||||||    
T  13396674 ctacgccaccgcaacgcct 13396692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 7924572 - 7924690
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| || |||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  7924572 taaccagagccatctgtctaacactgagtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 7924671  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  7924672 ctacgccacctcaacgcct 7924690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 8299989 - 8300107
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  8299989 taaccagagccatctgtctaacactgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 8300088  T
Q  140 ctacgccaccgcaacgcct 158  Q
    | |||||||| ||||||||    
T  8300089 cgacgccacctcaacgcct 8300107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 41665323 - 41665209
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||| ||||| ||| |||| |||||||| || | |||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||| |||    
T  41665323 taaccaaagtcatctgtctgtcactgattcctgtaaagaaactgttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgc 41665224  T
Q  140 ctacgccaccgcaac 154  Q
    |||||||||||||||    
T  41665223 ctacgccaccgcaac 41665209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 32266751 - 32266866
Alignment:
Q  43 ccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgccta 142  Q
    |||||||||||| |||  ||| ||||||||||| | ||||||||| |||||||||||| |||||||||||||||| |||||||| | |||||| | ||||    
T  32266751 ccaaagccatctgtctgacactgattcctgcaaagaaactgttagcaataaagccctacactcctctaccaactcctcctcccaggcccacaacctccta 32266850  T
Q  143 cgccaccgcaacgcct 158  Q
    ||||||||||||||||    
T  32266851 cgccaccgcaacgcct 32266866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 172289 - 172407
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||||||| ||||||||||| | |||| ||||||| ||||||||| |||||||||||||||  |||||||| | |||||| |||    
T  172289 taaccatagccatctgtctatcactgattcctgcaaagaaactattagtaacaaagccctacactcctctaccaacttctcctcccaggcccacaaccgc 172388  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  172389 ctacgccacctcaacgcct 172407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 13879443 - 13879355
Alignment:
Q  38 aataaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctccca 126  Q
    |||||||| | |||||||||  | || ||||||||||| |  ||||||||||||||||||||| ||||||||||||| || ||||||||    
T  13879443 aataaccacacccatctatcagtaacggattcctgcaaagagactgttagtaataaagccctacactcctctaccaagtcctcctccca 13879355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 25090598 - 25090647
Alignment:
Q  65 gattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaa 114  Q
    ||||||||||| |  ||||||||||||||||||||| |||||||||||||    
T  25090598 gattcctgcaaagagactgttagtaataaagccctacactcctctaccaa 25090647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 21168385 - 21168503
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||||| ||| |||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  21168385 taaccaaagccatctgtctgtcactgattcctgcaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 21168484  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||||||||||||    
T  21168485 ctacgccaccgcaacgcct 21168503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 2553827 - 2553939
Alignment:
Q  44 caaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctac 143  Q
    ||||||||||| ||| |||| ||||||||||| | |||||||||||||||||||||| |||||| ||||||||  | |||||||| |||||| |||||||    
T  2553827 caaagccatctgtctgtcactgattcctgcaaagaaactgttagtaataaagccctacactcctttaccaacttctactcccaagcccacaaccgcctac 2553926  T
Q  144 gccaccgcaacgc 156  Q
    |||||||||||||    
T  2553927 gccaccgcaacgc 2553939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 24767344 - 24767265
Alignment:
Q  79 aactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgccaccgcaacgcct 158  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||| || | |||||||||||||||||    
T  24767344 aactgttagtaatacaaccctacactcctctaccaactcttcctcccaagcccacaaccgtcgacgccaccgcaacgcct 24767265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 13937914 - 13937994
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgccac 148  Q
    |||||||| |||||||| ||||||||  ||||| ||||||||||||||||||||||||||  |||||| || | |||||||    
T  13937914 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaactcttcctcccaaacccacaagcggcgacgccac 13937994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 18682451 - 18682401
Alignment:
Q  77 gtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaa 127  Q
    |||||||| ||||||| ||||||| |||||||| |||||||||||||||||    
T  18682451 gtaactgtgagtaatagagccctacactcctctgccaactcttcctcccaa 18682401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 33185678 - 33185719
Alignment:
Q  97 cctaaactcctctaccaactcttcctcccaagtccacaaacg 138  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  33185678 cctacactcctctaccaactcttcctcccatgtccacaaacg 33185719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 14372920 - 14372874
Alignment:
Q  65 gattcctgcaatgtaactgttagtaataaagccctaaactcctctac 111  Q
    ||||||||||| | |||||| ||||||||||||||| ||||||||||    
T  14372920 gattcctgcaaagaaactgtcagtaataaagccctacactcctctac 14372874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 15740407 - 15740525
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||||| ||| |||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  15740407 taaccaaagccatctgtctgtcactgattcctgcaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 15740506  T
Q  140 ctacgccaccgcaacgcct 158  Q
    ||| ||||| |||||||||    
T  15740507 ctatgccactgcaacgcct 15740525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 19755453 - 19755571
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||||| ||| |||| ||||||||||| | |||| ||||||||||| ||||| |||||||||||||||| |||||| ||| |||||| |||    
T  19755453 taaccaaagccatctgtctgtcactgattcctgcaaagaaactattagtaataaaaccctacactcctctaccaactcctcctcctaagcccacaaccgc 19755552  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||||||||||||    
T  19755553 ctacgccaccgcaacgcct 19755571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 19784353 - 19784235
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||||| ||| |||| ||||||||||| | |||| ||||||||||| ||||| |||||||||||||||| |||||| ||| |||||| |||    
T  19784353 taaccaaagccatctgtctgtcactgattcctgcaaagaaactattagtaataaaaccctacactcctctaccaactcctcctcctaagcccacaaccgc 19784254  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||||||||||||    
T  19784253 ctacgccaccgcaacgcct 19784235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 47685849 - 47685731
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||  |||    
T  47685849 taaccaaagccatctgtctatcaccgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacagccgc 47685750  T
Q  140 ctacgccaccgcaacgcct 158  Q
    | |||||||| ||| ||||    
T  47685749 ccacgccacctcaatgcct 47685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 23642545 - 23642427
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| || |||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  23642545 taaccagagccatctgtctaacactgagtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 23642446  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  23642445 ctacgccacctcaacgcct 23642427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 47418990 - 47419108
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| ||||||||||||| ||| || |||||||| | || ||||||||| ||||||||| |||||||||||| ||| |||||||||| |||||| |||    
T  47418990 taaccagagccatctatctaacactgaatcctgcaaagaaattgttagtaacaaagccctacactcctctaccacctcctcctcccaagcccacaaccgc 47419089  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||||||||||||    
T  47419090 ctacgccaccgcaacgcct 47419108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 1828494 - 1828376
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    ||||||||||||| | ||  |||| || |||||||| | |||||||||||||||||||||  |||||||||||||||| |||||||||| |||||| |||    
T  1828494 taaccaaagccatttgtcagtcactgaatcctgcaaagaaactgttagtaataaagccctccactcctctaccaactcctcctcccaagcccacaaccgc 1828395  T
Q  140 ctacgccaccgcaacgcct 158  Q
    ||| |||||| ||||||||    
T  1828394 ctatgccaccacaacgcct 1828376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 54483115 - 54483027
Alignment:
Q  38 aataaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctccca 126  Q
    |||||||| | |||||||||  | || ||||||||||| |  ||||||||||||||| ||||| ||||||||||||| || ||||||||    
T  54483115 aataaccacacccatctatcagtaacggattcctgcaaagagactgttagtaataaacccctacactcctctaccaaatcctcctccca 54483027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 46145889 - 46145948
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaa 127  Q
    |||||||| |||||||| |||||||   ||||| |||||||| |||||||||||||||||    
T  46145889 tcctgcaaagtaactgtaagtaatagttccctacactcctctgccaactcttcctcccaa 46145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 48312321 - 48312364
Alignment:
Q  80 actgttagtaataaagccctaaactcctctaccaactcttcctc 123  Q
    ||||||||||||||||||||| ||||||||||||| || |||||    
T  48312321 actgttagtaataaagccctacactcctctaccaagtcctcctc 48312364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 2821966 - 2821917
Alignment:
Q  65 gattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaa 114  Q
    ||||||||||| |  |||||||||| |||||||||| |||||||||||||    
T  2821966 gattcctgcaaagagactgttagtattaaagccctacactcctctaccaa 2821917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 11909059 - 11908941
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  11909059 taaccagagccatctgtctatcactgattcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 11908960  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  11908959 ctacgccacctcaacgcct 11908941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 6050789 - 6050907
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| || |||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  6050789 taaccagagccatctgtctaacactgagtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 6050888  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  6050889 ctacgccacctcaacgcct 6050907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 35541235 - 35541353
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| |||||||||||   |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  35541235 taaccagagccatctgtctaacactgattcctgcaaaaaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 35541334  T
Q  140 ctacgccaccgcaacgcct 158  Q
    | |||||||| ||||||||    
T  35541335 cgacgccacctcaacgcct 35541353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 2491429 - 2491515
Alignment:
Q  71 tgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgccaccgcaacgcc 157  Q
    ||||| |||||||| |||||||   ||||| ||||||||||||||||||||||||||| ||||||||| | ||||||| || |||||    
T  2491429 tgcaaagtaactgtaagtaatagtaccctacactcctctaccaactcttcctcccaagcccacaaacgacgacgccactgccacgcc 2491515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 31779477 - 31779529
Alignment:
Q  68 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttc 120  Q
    ||||||||||||||||| |||||||   ||||| |||||||||||||||||||    
T  31779477 tcctgcaatgtaactgtgagtaatagttccctacactcctctaccaactcttc 31779529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 22191678 - 22191618
Alignment:
Q  97 cctaaactcctctaccaactcttcctcccaagtccacaaacgcctacgccaccgcaacgcc 157  Q
    |||| ||||| |||||||||| |||||||| | |||||| |||||||||||| || |||||    
T  22191678 cctacactcccctaccaactcctcctcccatgcccacaaccgcctacgccactgccacgcc 22191618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 3441 - 3556
Alignment:
Q  43 ccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgccta 142  Q
    |||||||||||| ||| |||| |||||||| || | |||||||||||||||||||||| |||||||||||||||| |||||||| | |||||| | ||||    
T  3441 ccaaagccatctgtctgtcactgattcctgtaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaggcccacaacctccta 3540  T
Q  143 cgccaccgcaacgcct 158  Q
    ||||||||||||||||    
T  3541 cgccaccgcaacgcct 3556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 105797 - 105679
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| |||||||| |||| ||| || |||||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||    
T  105797 taaccagagccatctgtctaacactgagtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgc 105698  T
Q  140 ctacgccaccgcaacgcct 158  Q
    |||||||||| ||||||||    
T  105697 ctacgccacctcaacgcct 105679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 41207202 - 41207320
Alignment:
Q  40 taaccaaagccatctatctatcaccgattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagtccacaaacgc 139  Q
    |||||| | ||||||||||  ||| ||||||||||| | |||||| | ||||||| ||||| ||||||||||||||||||||||||| | |||||| ||     
T  41207202 taaccacaaccatctatctgccactgattcctgcaaggaaactgtaaataataaaaccctacactcctctaccaactcttcctcccatgcccacaaccga 41207301  T
Q  140 ctacgccaccgcaacgcct 158  Q
    | ||||||  |||||||||    
T  41207302 cgacgccattgcaacgcct 41207320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 40176879 - 40176940
Alignment:
Q  65 gattcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctccca 126  Q
    ||||||||||| |  ||||||||||||||||||||| ||||||||||||| || ||||||||    
T  40176879 gattcctgcaaagagactgttagtaataaagccctacactcctctaccaagtcctcctccca 40176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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