View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_48 (Length: 272)
Name: NF20367_low_48
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_48 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 1178967 - 1179073
Alignment:
| Q |
166 |
ttttgagctacattttaagttacttttcagttacatccatcgttagttcaagatctagaattattaccacctatgtggtagattctactcatgaatgaat |
265 |
Q |
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| T |
1178967 |
ttttgagttacattttaagttacttttcagttacatccatcgttagttcaagatctagaattattatcacctatgtggtagattctactcatgaatgaat |
1179066 |
T |
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| Q |
266 |
catgttt |
272 |
Q |
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||||||| |
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| T |
1179067 |
catgttt |
1179073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 1178836 - 1178897
Alignment:
| Q |
118 |
tcatggcttctaagattgtttaagttgcattctatgccgctgtctaaattttgagctacatt |
179 |
Q |
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| T |
1178836 |
tcatggtttctaagattgtttaagttgcattctatgccgctgtctaaattttgagttacatt |
1178897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 43169735 - 43169688
Alignment:
| Q |
166 |
ttttgagctacattttaagttacttttcagttacatccatcgttagtt |
213 |
Q |
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| T |
43169735 |
ttttgagttacattttaagttgcttttcagttacatctatcgttagtt |
43169688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 43169854 - 43169794
Alignment:
| Q |
121 |
tggcttctaagattgtttaagttgcattctatgccgctgtctaaattttgagctacatttt |
181 |
Q |
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| T |
43169854 |
tggcttttaggattgtttaagttgctttatatgctgttgtataaattttgagttacatttt |
43169794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45497398 - 45497435
Alignment:
| Q |
1 |
ttgttgtggaaattcaaagttagacaaagtataggtgt |
38 |
Q |
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| T |
45497398 |
ttgttgtggaaattcaaagttagccaaggtataggtgt |
45497435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 37500177 - 37500229
Alignment:
| Q |
120 |
atggcttctaagattgtttaagttgcattctatgccgctgtctaaattttgag |
172 |
Q |
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| T |
37500177 |
atggtttctaagtttgtttaagttgcattgcatgatgctgtctaaattttgag |
37500229 |
T |
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