View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_5 (Length: 575)
Name: NF20367_low_5
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 378 - 570
Target Start/End: Original strand, 7411832 - 7412018
Alignment:
| Q |
378 |
tttgtcaccgatgaagaaaggttgcttgggagatggtggagctttggaggcattagataggagagaagaaatcttattcttgatgttgagattcaatggt |
477 |
Q |
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| T |
7411832 |
tttgttaccgatgaagaaaggttgcttgggagatggtggagctttggaggcattagataggagagaagaaatcttattcttgatgttgagattcaatggt |
7411931 |
T |
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| Q |
478 |
aatgcaatctcttttggagaattgttcatctctattactatctatgtttctatgattcttgtgtgtgacacacacataatacattcacctatg |
570 |
Q |
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| T |
7411932 |
aatgcaatctcttttggagaattgttcatc------actatctatgtttctatgattcttgtgtgtgacacacacataatacattcacctatg |
7412018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 111 - 298
Target Start/End: Original strand, 7411567 - 7411752
Alignment:
| Q |
111 |
aaaatggagaggatcttcaatcaattggataactctttgttgataaaatataaaacnnnnnnnnnttatatcaaagagtgcatattaattacttgattaa |
210 |
Q |
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| T |
7411567 |
aaaatggagaggatcttcaatcaattggacaactctttgttgataaaatataaaacaaaaaaaaattatatca--gagtgcattttaattacttgattaa |
7411664 |
T |
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| Q |
211 |
tgaggacaacacgttgatcatgaaactggctatttatcaagttgcacacagttgttttcccagatgcagttccaccagcaacccctaa |
298 |
Q |
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| T |
7411665 |
tgaggacaacacgttgatcatgaaactggctatttatcaagttgcacacagttgttttcccagatgcagttccaccagcaacccctaa |
7411752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 7411467 - 7411539
Alignment:
| Q |
22 |
acctcaagaaataaagagacaaaattctcacatttgcgatatgattcaatctcaaactcttatgagtgcatat |
94 |
Q |
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| T |
7411467 |
acctcaagaaataaagagacaaaattctcacatttgcgatatgattcaatctcaaactcttatgagtgcatat |
7411539 |
T |
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