View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_50 (Length: 250)

Name: NF20367_low_50
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_50
NF20367_low_50
[»] chr6 (8 HSPs)
chr6 (16-250)||(13564779-13565012)
chr6 (16-221)||(13569363-13569567)
chr6 (16-221)||(13573909-13574113)
chr6 (16-221)||(13576448-13576652)
chr6 (16-109)||(13579705-13579798)
chr6 (125-218)||(13578983-13579075)
chr6 (101-164)||(13579377-13579439)
chr6 (37-91)||(14932572-14932626)
[»] scaffold0160 (1 HSPs)
scaffold0160 (35-81)||(29274-29320)
[»] chr1 (2 HSPs)
chr1 (27-81)||(1138598-1138652)
chr1 (32-69)||(23439877-23439914)
[»] chr3 (1 HSPs)
chr3 (38-81)||(47079727-47079770)
[»] chr2 (1 HSPs)
chr2 (27-81)||(28194257-28194311)
[»] chr4 (1 HSPs)
chr4 (37-81)||(13017748-13017792)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 13565012 - 13564779
Alignment:
Q  16 attgacacatgagagagattcgaacctaagacattgagaggaacacattccaagattccaagccaataaaaccaaacattcatcttaaattttattatta 115  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13565012 attgacacctgagagagattcgaacctgagaccttgagaggaacacactccaagattccaagccaataaaaccaaacattcatcttaaattttattatta 13564913  T
Q  116 attagaaatcatatatgttttaaggatatataagatttatcaatctatttctacaactaataaaaataaaattgatcatttaatcttttacaaataaacc 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  13564912 attagaaatcatacatgttttaaggatatataagatttatcaatctatttatacaactaaaaaaaataaaattgatcatttaatc-tttacaaataaacc 13564814  T
Q  216 attaaaccgttatagattctcattaaaaatttata 250  Q
    |||||||||||||||||||||||||||||||||||    
T  13564813 attaaaccgttatagattctcattaaaaatttata 13564779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 13569567 - 13569363
Alignment:
Q  16 attgacacatgagagagattcgaacctaagacattgagaggaacacattccaagattccaagccaataaaaccaaacattcatcttaaattttattatta 115  Q
    |||||||| |||||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13569567 attgacacttgagagagattcgaacctgagaccttgagaggaacaaactccaagattccaagccaataaaaccaaacattcatcttaaattttattatta 13569468  T
Q  116 attagaaatcatatatgttttaaggatatataagatttatcaatctatttctacaactaataaaaataaaattgatcatttaatcttttacaaataaacc 215  Q
    | ||||||||||| |||||| || |||||||||||| ||||||||||||| ||||| |||  ||||||||||||||||||||||| ||||||||||||||    
T  13569467 actagaaatcatacatgtttcaaagatatataagatgtatcaatctatttatacaattaaacaaaataaaattgatcatttaatc-tttacaaataaacc 13569369  T
Q  216 attaaa 221  Q
    ||||||    
T  13569368 attaaa 13569363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 13574113 - 13573909
Alignment:
Q  16 attgacacatgagagagattcgaacctaagacattgagaggaacacattccaagattccaagccaataaaaccaaacattcatcttaaattttattatta 115  Q
    ||||| || |||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13574113 attgaaacctgagagagattcgaacctgagaccttgagaggaacacactctaagattccaagccaataaaaccaaacattcatcttaaattttattatta 13574014  T
Q  116 attagaaatcatatatgttttaaggatatataagatttatcaatctatttctacaactaataaaaataaaattgatcatttaatcttttacaaataaacc 215  Q
    ||||||||||||| |||||||||||||||  |||||| |||||||||||  ||||  |||  || |||||||||||||| ||||  ||||||||||||||    
T  13574013 attagaaatcatacatgttttaaggatatcgaagattcatcaatctattcttacagttaaacaatataaaattgatcatataat-atttacaaataaacc 13573915  T
Q  216 attaaa 221  Q
    ||||||    
T  13573914 attaaa 13573909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 13576652 - 13576448
Alignment:
Q  16 attgacacatgagagagattcgaacctaagacattgagaggaacacattccaagattccaagccaataaaaccaaacattcatcttaaattttattatta 115  Q
    ||||| || |||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13576652 attgaaacctgagagagattcgaacctgagaccttgagaggaacacactctaagattccaagccaataaaaccaaacattcatcttaaattttattatta 13576553  T
Q  116 attagaaatcatatatgttttaaggatatataagatttatcaatctatttctacaactaataaaaataaaattgatcatttaatcttttacaaataaacc 215  Q
    ||||||||||||| |||||||||||||||  |||||| |||||||||||  ||||  |||  || |||||||||||||| ||||  ||||||||||||||    
T  13576552 attagaaatcatacatgttttaaggatatcgaagattcatcaatctattcttacagttaaacaatataaaattgatcatataat-atttacaaataaacc 13576454  T
Q  216 attaaa 221  Q
    ||||||    
T  13576453 attaaa 13576448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 13579798 - 13579705
Alignment:
Q  16 attgacacatgagagagattcgaacctaagacattgagaggaacacattccaagattccaagccaataaaaccaaacattcatcttaaatttta 109  Q
    |||||||| |||||||||||||||||  |||| |||||||||||||| ||||||||| |||||||| | ||||| |||||||||||||||||||    
T  13579798 attgacacctgagagagattcgaaccggagaccttgagaggaacacactccaagatttcaagccaacacaaccatacattcatcttaaatttta 13579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 13579075 - 13578983
Alignment:
Q  125 catatatgttttaaggatatataagatttatcaatctatttctacaactaataaaaataaaattgatcatttaatcttttacaaataaaccatt 218  Q
    |||| |||||||||||||||  |||||| |||||||||||  ||||  |||  || |||||||||||||| ||||  |||||||||||||||||    
T  13579075 catacatgttttaaggatatcgaagattcatcaatctattcttacagttaaacaatataaaattgatcatataat-atttacaaataaaccatt 13578983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 13579439 - 13579377
Alignment:
Q  101 taaattttattattaattagaaatcatatatgttttaaggatatataagatttatcaatctatt 164  Q
    ||||||||||||||||||| |||||||| |||||||||  | | |||| |||||||||||||||    
T  13579439 taaattttattattaattaaaaatcatacatgttttaaaca-aaataaaatttatcaatctatt 13579377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 14932626 - 14932572
Alignment:
Q  37 gaacctaagacattgagaggaacacattccaagattccaagccaataaaaccaaa 91  Q
    ||||||||||||||||||||| |||| | |||| ||||||||||| || ||||||    
T  14932626 gaacctaagacattgagaggagcacacttcaaggttccaagccaacaacaccaaa 14932572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 29274 - 29320
Alignment:
Q  35 tcgaacctaagacattgagaggaacacattccaagattccaagccaa 81  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||    
T  29274 tcgaacctaagaccttgagaggaacacacttcaagattccaagccaa 29320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 1138652 - 1138598
Alignment:
Q  27 agagagattcgaacctaagacattgagaggaacacattccaagattccaagccaa 81  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||  ||||||||    
T  1138652 agagagattcgaacctaagaccttgagaggagcacactccaagatctcaagccaa 1138598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 23439877 - 23439914
Alignment:
Q  32 gattcgaacctaagacattgagaggaacacattccaag 69  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  23439877 gattcgaacctgagacattgagaggaacacactccaag 23439914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 47079770 - 47079727
Alignment:
Q  38 aacctaagacattgagaggaacacattccaagattccaagccaa 81  Q
    |||||||||| || |||||||||||||||||||| |||||||||    
T  47079770 aacctaagaccttaagaggaacacattccaagatcccaagccaa 47079727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 28194257 - 28194311
Alignment:
Q  27 agagagattcgaacctaagacattgagaggaacacattccaagattccaagccaa 81  Q
    ||||||| ||||||||||||| || |||||| |||| |||||||| |||||||||    
T  28194257 agagagaatcgaacctaagaccttaagaggagcacactccaagatcccaagccaa 28194311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 13017792 - 13017748
Alignment:
Q  37 gaacctaagacattgagaggaacacattccaagattccaagccaa 81  Q
    |||||| |||| |||||||||||||| | ||||||||||||||||    
T  13017792 gaacctgagaccttgagaggaacacacttcaagattccaagccaa 13017748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University