View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_51 (Length: 244)
Name: NF20367_low_51
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 37629437 - 37629226
Alignment:
| Q |
19 |
gaaaagagatcgcacttcaccttgcttcactcggcgcaagactcgtcatcaactacacttccaactccaacctcgctgactccgttgccgccgagatcaa |
118 |
Q |
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| T |
37629437 |
gaaaagagatcgcacttcaccttgcttcactcggcgcaagactcgtcatcaactacacttccaactcccacctcgctgactccgttgccgccgagatcaa |
37629338 |
T |
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| Q |
119 |
cgctaatcaaaccactccacgagccatcaccgttcgcgccgacgtatccgatccagaaggtgtaaaatctctcttcgactccgctgaacaagccttcaac |
218 |
Q |
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| T |
37629337 |
cgctaatcaaaccactccacgagccataaccgttcgcgccgacgtatccgatccagaaggtgtaaaatctctcttcgactccgctgaacaagccttcaac |
37629238 |
T |
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| Q |
219 |
tcaccagttcat |
230 |
Q |
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|||||||||||| |
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| T |
37629237 |
tcaccagttcat |
37629226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 37622596 - 37622400
Alignment:
| Q |
21 |
aaagagatcgcacttcaccttgcttcactcggcgcaagactcgtcatcaactacacttccaactccaacctcgctgactccgttgccgccgagatcaacg |
120 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
37622596 |
aaagagatcgcactccaccttgcttcactcggcgcaagactcgtcatcaactatacctccaactccaacaatgctgattccgtcgccgccgagatcaacg |
37622497 |
T |
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| Q |
121 |
ctaatcaaaccactccacgagccatcaccgttcgcgccgacgtatccgatccagaaggtgtaaaatctctcttcgactccgctgaacaagccttcaa |
217 |
Q |
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| T |
37622496 |
ccaaccaaacaacttttcgagccatcaccgtccgcgctgacgtgtctgatccggagggtgtaaaatctctcttcgactccgccgaagaagccttcaa |
37622400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 30395601 - 30395815
Alignment:
| Q |
15 |
atcagaaaagagatcgcacttcaccttgcttcactcggcgcaagactcgtcatcaactacacttccaactccaacctcgctgactccgttgccgccgaga |
114 |
Q |
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||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||| | || ||||| | ||||||||| |
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| T |
30395601 |
atcagaaaaaagatcgcacttcactttgcttcactcagc-caagactcatcatcaactacacttccaattccattcaagcagactcattcaccgccgaga |
30395699 |
T |
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| Q |
115 |
tcaacgctaatcaaaccactccacgagccatcaccgttcgcgccgacgtatccgatccagaaggtgtaaaatctctcttcgactccgctgaacaagcctt |
214 |
Q |
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||||| |||| |||||||||| ||||||||||||||| || || || || | |||||||||||| | ||||||||||| ||||| | ||| ||||||| |
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| T |
30395700 |
tcaacactaagcaaaccactctacgagccatcaccgtccgtgctgatgtgtttgatccagaaggtctgaaatctctcttaaactccaccgaagaagcctt |
30395799 |
T |
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| Q |
215 |
caactcaccagttcat |
230 |
Q |
| |
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||| || || |||||| |
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| T |
30395800 |
caaatctccggttcat |
30395815 |
T |
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