View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_55 (Length: 237)
Name: NF20367_low_55
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_55 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 38549730 - 38549509
Alignment:
| Q |
16 |
cttttgacctcaaaaaattgaatgaatacacaaattggtattcaaaattgtaagcatgatcaaataaattgttaatgttgtaaattgataataatagggt |
115 |
Q |
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| T |
38549730 |
cttttgacctcaaaaaattgaatgaatacacaaattggtattcaaaattgtaagcatgatcaaataaattgttaatgttgtaaattgataataatagggt |
38549631 |
T |
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| Q |
116 |
attttttcgataaaataccttataatgataataggttatttcatcataactaattattgatattttagtttattgcttggttttattttgttctaaatga |
215 |
Q |
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| T |
38549630 |
attttttcgatgaaataccttataatgataataggttatttcatcataactaattattgatattttagtttattgcttggttttattttgttctaaatga |
38549531 |
T |
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| Q |
216 |
ttattatctaatatgagagtgc |
237 |
Q |
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| T |
38549530 |
ttattatctaatatgagagtgc |
38549509 |
T |
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