View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_6 (Length: 563)
Name: NF20367_low_6
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_6 |
 | |
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| [»] scaffold0119 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Original strand, 26671857 - 26672392
Alignment:
| Q |
16 |
atatgaccaataacaagccaagtaatggctatttgaccaaatttataagtactaacaatataaggccaagtaagtacgatagcaaagacgattctaaatc |
115 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26671857 |
atatgatcaataacaagccaagtaatggctatttgaccaaatttataagtactaacaatataaggccaagtaagtacgatagcaaagacgattctaaatc |
26671956 |
T |
|
| Q |
116 |
ttatataagtgcatcacagtgctgataaaacacaccacataaaaaactcgaaacaaacaactaccgttgtaaactctagctaggttctattagatgctac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26671957 |
ttatataagtgcatcacagtgctgataaaacacagcacataaaaaactcgaaacaaacaactaccgttgtaaactctagctaggttctattagatgctac |
26672056 |
T |
|
| Q |
216 |
aattacttatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcacgcttct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26672057 |
aattacttatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcacgcttct |
26672156 |
T |
|
| Q |
316 |
gcacaagctcgtttagaaaatcatcaagcttctcaatagtgacgtttggcatcaccaccacatgagcgatgttccccttgcatgctaactgccacttgcg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26672157 |
gcacaagctcgtttagaaaatcatcaagcttctcaatagtgacgtttggcatcaccaccacatgagcgatgttccccttgcatgctaactgccacttgcg |
26672256 |
T |
|
| Q |
416 |
tataaattcttcatcatgtggtcgctcaaatacaaccgtgctgctaagctcattaagcattgcaccaatcccagcctcgataaggcggtctttgaagtag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26672257 |
tataaattcttcatcatgtggtcgctcaaatacaaccgtgctgctaagctcattaagcattgcaccaatcccagcctcgataaggcggtctttgaagtag |
26672356 |
T |
|
| Q |
516 |
tgtgcattccgcaagcatttctgcacttctttctga |
551 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |
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| T |
26672357 |
tatgcattccgcaagcatttctgcacttctttctga |
26672392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Original strand, 26674385 - 26674920
Alignment:
| Q |
16 |
atatgaccaataacaagccaagtaatggctatttgaccaaatttataagtactaacaatataaggccaagtaagtacgatagcaaagacgattctaaatc |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26674385 |
atatgatcaataacaagccaagtaatggctatttgaccaaatttataagtactaacaatataaggccaagtaagtacgatagcaaagacgattctaaatc |
26674484 |
T |
|
| Q |
116 |
ttatataagtgcatcacagtgctgataaaacacaccacataaaaaactcgaaacaaacaactaccgttgtaaactctagctaggttctattagatgctac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26674485 |
ttatataagtgcatcacagtgctgataaaacacagcacataaaaaactcgaaacaaacaactaccgttgtaaactctagctaggttctattagatgctac |
26674584 |
T |
|
| Q |
216 |
aattacttatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcacgcttct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26674585 |
aattacttatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcacgcttct |
26674684 |
T |
|
| Q |
316 |
gcacaagctcgtttagaaaatcatcaagcttctcaatagtgacgtttggcatcaccaccacatgagcgatgttccccttgcatgctaactgccacttgcg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26674685 |
gcacaagctcgtttagaaaatcatcaagcttctcaatagtgacgtttggcatcaccaccacatgagcgatgttccccttgcatgctaactgccacttgcg |
26674784 |
T |
|
| Q |
416 |
tataaattcttcatcatgtggtcgctcaaatacaaccgtgctgctaagctcattaagcattgcaccaatcccagcctcgataaggcggtctttgaagtag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26674785 |
tataaattcttcatcatgtggtcgctcaaatacaaccgtgctgctaagctcattaagcattgcaccaatcccagcctcgataaggcggtctttgaagtag |
26674884 |
T |
|
| Q |
516 |
tgtgcattccgcaagcatttctgcacttctttctga |
551 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |
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| T |
26674885 |
tatgcattccgcaagcatttctgcacttctttctga |
26674920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Original strand, 1301203 - 1301734
Alignment:
| Q |
16 |
atatgaccaataacaagccaagtaatggctatttgaccaaatttataagtactaacaatataaggccaagtaagtacgatagcaaagacgattctaaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1301203 |
atatgaccaataacaagccaagtaatggctatttgaccaaatttataagtactaacaatataaggccaagtaagtacgatagcaaagacgattctaaatc |
1301302 |
T |
|
| Q |
116 |
ttatataagtgcatcacagtgctgataaaacacaccacataaaaaactcgaaacaaacaactaccgttgtaaactctagctaggttctattagatgctac |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1301303 |
ttatacaagtgcatcacagtgctgataaaacacaccacataaaaaactcgaaacaaacaactaccgttgtaaactctag----gttctattagatgctac |
1301398 |
T |
|
| Q |
216 |
aattacttatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcacgcttct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1301399 |
aattacttatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcacgcttct |
1301498 |
T |
|
| Q |
316 |
gcacaagctcgtttagaaaatcatcaagcttctcaatagtgacgtttggcatcaccaccacatgagcgatgttccccttgcatgctaactgccacttgcg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1301499 |
gcacaagctcgtttagaaaatcatcaagcttctcaatagtgacgtttggcatcaccaccacatgagcgatgttccccttgcatgctaactgccacttgcg |
1301598 |
T |
|
| Q |
416 |
tataaattcttcatcatgtggtcgctcaaatacaaccgtgctgctaagctcattaagcattgcaccaatcccagcctcgataaggcggtctttgaagtag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1301599 |
tataaattcttcatcatgtggtcgctcaaatacaaccgtgctgctaagctcattaagcattgcaccaatcccagcctcgataaggcggtctttgaagtag |
1301698 |
T |
|
| Q |
516 |
tgtgcattccgcaagcatttctgcacttctttctga |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1301699 |
tgtgcattccgcaagcatttctgcacttctttctga |
1301734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 154 - 549
Target Start/End: Complemental strand, 1291545 - 1291149
Alignment:
| Q |
154 |
ataaaaaactcgaaacaaacaactaccgttgtaaactctagctaggttctattagatgctacaattacttatgctgagcacataggc-----aactgttt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
1291545 |
ataaaaaactcgaaacaaacaactaccgttgtaaactctag----gttcaattagatgctccaattacttatgatgagcacataggctaggcaactgttt |
1291450 |
T |
|
| Q |
249 |
tcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcacgcttctgcacaagctcgtttagaaaatcatcaagcttct |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1291449 |
tcacctacatctgatgctatgcaatacggttgaaatgtaccatattcaaaccaggtagcacgcttctgcacaagctcgtttagaaaatcatcaagcttct |
1291350 |
T |
|
| Q |
349 |
caatagtgacgtttggcatcaccaccacatgagcgatgttccccttgcatgctaactgccacttgcgtataaattcttcatcatgtggtcgctcaaatac |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1291349 |
caatagtgacgtttggcatcaccaccacatgagcgatgttccccttgcatgctaactgccacttgcgtataaattcttcatcatgtggtcgctcaaatac |
1291250 |
T |
|
| Q |
449 |
aaccgtgctgctaagctcattaagcattgcaccaatcccagcctcgataaggcggtctttgaagtagtgtgcattccgcaagcatttctgcacttctttc |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1291249 |
aaccgtgctgctaagctcattaagcattgcaccaatcccagcctcgataaggcggtctttgaagtagtgtgcattccgcaagcatttctgcacttctttc |
1291150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 20790 - 20872
Alignment:
| Q |
223 |
tatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggta |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20790 |
tatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggta |
20872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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