View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_62 (Length: 214)
Name: NF20367_low_62
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 52078837 - 52078661
Alignment:
| Q |
18 |
tttgacttacaaaatacta-gtttgttacca----agctcaaacccgttatcaagcttaaaagaacaaagactctacattccataaaccatgaacaattc |
112 |
Q |
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| T |
52078837 |
tttgacttacaaaataccatttttgttaccaaactaactcaaacccgttatcaagcttaaaagattaaagactctacattccataaaccatgaacaattc |
52078738 |
T |
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| Q |
113 |
aaatgcatagaatgaatgtaaaaactatctggttgccactaactgtttaggaagtgttttgtagtctttttagatat |
189 |
Q |
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| T |
52078737 |
aaatgcatagaatgaatgtaaaaactatctggttgacattaactgtttaggaagtgttttgtagtctttttagatat |
52078661 |
T |
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