View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_7 (Length: 557)

Name: NF20367_low_7
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_7
NF20367_low_7
[»] chr3 (2 HSPs)
chr3 (73-543)||(8522210-8522680)
chr3 (32-72)||(8522147-8522187)
[»] chr5 (12 HSPs)
chr5 (126-543)||(42122646-42123057)
chr5 (129-506)||(42116886-42117272)
chr5 (255-543)||(34233306-34233594)
chr5 (255-543)||(34241079-34241367)
chr5 (129-543)||(42128044-42128451)
chr5 (232-411)||(41714168-41714347)
chr5 (234-543)||(41618171-41618480)
chr5 (266-543)||(41572532-41572809)
chr5 (471-543)||(41714071-41714143)
chr5 (31-73)||(42116804-42116846)
chr5 (144-203)||(34241407-34241466)
chr5 (149-203)||(34233634-34233688)
[»] chr6 (1 HSPs)
chr6 (149-532)||(25523558-25523943)
[»] chr4 (1 HSPs)
chr4 (113-543)||(11117289-11117720)
[»] chr2 (5 HSPs)
chr2 (204-506)||(11994951-11995256)
chr2 (204-506)||(12247674-12247979)
chr2 (253-369)||(32682381-32682497)
chr2 (285-413)||(9423378-9423506)
chr2 (384-428)||(32682349-32682393)


Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 73 - 543
Target Start/End: Original strand, 8522210 - 8522680
Alignment:
Q  73 aaacttacaactgaaaatcaaactaactagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataaatacaaca 172  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8522210 aaacttacaactgaaaatcaaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataattacaaca 8522309  T
Q  173 ataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaactttggttcctcctcattcttgtccttcttttcactctcctcttaggc 272  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8522310 acaaaactacgacatttgcaccatctgattctgattctgattcgtgattgaactttggttcctcgtcattcttgtccttcttttcactctcctcttaggc 8522409  T
Q  273 tgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattg 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8522410 tgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattg 8522509  T
Q  373 ccaccggtttccatccaaatccaaatttctcttcactgcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaccaaggtaa 472  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||    
T  8522510 ccactggtttccatccaaattcaaacttctcttcactgcaaaagttgttggctgaaggtgcagaatgttgttcaggtccacacatttttgacaagggtaa 8522609  T
Q  473 tccacataactccaagtttccttcataggaatcaattttaaaagtattgaattgctttccctgaggtattt 543  Q
    ||||||||| ||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||    
T  8522610 tccacataaatccaagtttccttcataagaatcatttgtaaatgtattgaattgctttccctgaggtattt 8522680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 8522147 - 8522187
Alignment:
Q  32 aacttggaattttattatataacacatcttgtggcatgcac 72  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  8522147 aacttggaattttattatataacacaacttgtggcatgcac 8522187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 126 - 543
Target Start/End: Original strand, 42122646 - 42123057
Alignment:
Q  126 aacagaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaac 225  Q
    ||||||||||||||| |||||| |||| ||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||       || ||||||    
T  42122646 aacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgcaccatctgattctgattca------tggttgaac 42122739  T
Q  226 tttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatata 325  Q
      ||   |||||||| |||||| || ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42122740 catgtgccctcctcactcttgttctccttgtcactcttctcttaggcggaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatata 42122839  T
Q  326 atatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactgcaaaagttgttggct 425  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||| ||| |||| ||||||    
T  42122840 atatccaatgcatattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcactccaagagttcttggct 42122939  T
Q  426 gaaggtgcaaaatgttgttcaggtccacacatttttgaccaaggtaatccacataactccaagtttccttcataggaatcaattttaaaagtattgaatt 525  Q
    ||||||| | |||||||||||||||||||  |||||||| | ||||||||||||||| |  | |||||||||||||||||| || |||| |||||||| |    
T  42122940 gaaggtggagaatgttgttcaggtccacatttttttgacaagggtaatccacataaccctgaatttccttcataggaatcatttgtaaatgtattgaact 42123039  T
Q  526 gctttccctgaggtattt 543  Q
    ||||||| ||||||||||    
T  42123040 gctttccttgaggtattt 42123057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 129 - 506
Target Start/End: Original strand, 42116886 - 42117272
Alignment:
Q  129 agaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctg------attctgattctgatttgtgattg 222  Q
    |||||||||||| | |||| |||| |||||||||||  ||||||||||||||| |||||||||||||||||      |||||||||||||||  || |||    
T  42116886 agaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattctgattctgattcatggttg 42116985  T
Q  223 aactttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacat 322  Q
     ||  |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  42116986 taccatggttccttctcattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaatccatctaggctttccaattaaaaacat 42117085  T
Q  323 ataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactgcaaaa---gttg 419  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||   ||||    
T  42117086 aaaatatccaatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctcttcactgcaaaagctgttg 42117185  T
Q  420 ttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaccaaggtaatccacataactccaagtttccttcataggaatca 506  Q
    |||||||||  || | |||| |||||||||||||| || |||||| | || |||||||||||  ||||||||||||  |||||||||    
T  42117186 ttggctgaaattggagaatgatgttcaggtccacaaatctttgacaacggaaatccacataaacccaagtttcctttgtaggaatca 42117272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 255 - 543
Target Start/End: Complemental strand, 34233594 - 34233306
Alignment:
Q  255 ttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatc 354  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  34233594 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34233495  T
Q  355 cacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactgcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccaca 454  Q
    ||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||||||||    
T  34233494 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcactccaaaagttgttggctgaaggtggagaatgttgttccggtccaca 34233395  T
Q  455 catttttgaccaaggtaatccacataactccaagtttccttcataggaatcaattttaaaagtattgaattgctttccctgaggtattt 543  Q
      | |||||| | ||||||||||||||| ||||||| |||| ||| |||||| || |||| ||||||||||||||||| ||||||||||    
T  34233394 tttctttgacaagggtaatccacataaccccaagttccctttataagaatcatttgtaaatgtattgaattgctttccttgaggtattt 34233306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 255 - 543
Target Start/End: Complemental strand, 34241367 - 34241079
Alignment:
Q  255 ttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatc 354  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  34241367 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34241268  T
Q  355 cacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactgcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccaca 454  Q
    ||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||||||||    
T  34241267 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcactccaaaagttgttggctgaaggtggagaatgttgttccggtccaca 34241168  T
Q  455 catttttgaccaaggtaatccacataactccaagtttccttcataggaatcaattttaaaagtattgaattgctttccctgaggtattt 543  Q
      | |||||| | ||||||||||||||| ||||||| |||| ||| |||||| || |||| ||||||||||||||||| ||||||||||    
T  34241167 tttctttgacaagggtaatccacataaccccaagttccctttataagaatcatttgtaaatgtattgaattgctttccttgaggtattt 34241079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 129 - 543
Target Start/End: Original strand, 42128044 - 42128451
Alignment:
Q  129 agaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaacttt 228  Q
    |||||||||||| | || | |||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||       || ||||||  |    
T  42128044 agaaagtaaaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattca------tggttgaaccat 42128137  T
Q  229 ggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataata 328  Q
    |   |||||||| |||||| || ||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  42128138 gtgccctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaagccatctagacttttcaattaaaaacatataata 42128237  T
Q  329 tccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactgcaaaagttgttggc--tg 426  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||| ||| |||||||| |   |    
T  42128238 tccaatgcctattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcactccaagagttgttgtcaaag 42128337  T
Q  427 aa-ggtgcaaaatgttgttcaggtccacacatttttgaccaaggtaatccacataactccaagtttccttcataggaatcaattttaaaagtattgaatt 525  Q
    ||  ||| ||    |||||||||||||||  | |||||| | || |||||||||||| ||||||||||||||||||||||| || |||| ||||||||||    
T  42128338 aattgtggaa----ttgttcaggtccacaattctttgacaagggaaatccacataaccccaagtttccttcataggaatcatttgtaaatgtattgaatt 42128433  T
Q  526 gctttccctgaggtattt 543  Q
    ||  ||| ||||||||||    
T  42128434 gcggtccttgaggtattt 42128451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 232 - 411
Target Start/End: Complemental strand, 41714347 - 41714168
Alignment:
Q  232 tcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatcc 331  Q
    |||||||||||||||| || | | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||    
T  41714347 tcctcctcattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaagccatctaggctttccgatcaaaaacatgtaataccc 41714248  T
Q  332 aatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactgc 411  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||    
T  41714247 aatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctctgcactgc 41714168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 234 - 543
Target Start/End: Complemental strand, 41618480 - 41618171
Alignment:
Q  234 ctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaa 333  Q
    ||||||| |||||| || ||| |||||||   |||||| ||||| ||||  ||||| |||||||||||||||||||||||||| |||| | || ||||||    
T  41618480 ctcctcactcttgtgctccttgtcactctttgcttaggttgacctccaaccatcatcacaagccatctaggctttccaattaacaacacaaaacatccaa 41618381  T
Q  334 tgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactgcaaaagttgttggctgaaggtgc 433  Q
     |||||||||||| || | ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||| || | | |     
T  41618380 ggcctattccaataaccattccacatccatatccaatagccactggtttccatccaaatccaaatttctcttcactccaaaggttgttgggtggaagcgg 41618281  T
Q  434 aaaatgttgttcaggtccacacatttttgaccaaggtaatccacataactccaagtttccttcataggaatcaattttaaaagtattgaattgctttccc 533  Q
    | |||||||||||||| ||||  | |||||| | || ||||| |||||  |||||||||||||||| || ||| |   ||| |||||||| || |||||     
T  41618280 agaatgttgttcaggttcacatttctttgacaagggaaatccgcataatcccaagtttccttcatatgagtcattggaaaatgtattgaactgttttcct 41618181  T
Q  534 tgaggtattt 543  Q
    ||||||||||    
T  41618180 tgaggtattt 41618171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 266 - 543
Target Start/End: Complemental strand, 41572809 - 41572532
Alignment:
Q  266 cttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtat 365  Q
    |||||| ||||| ||||  ||||| ||||||||||||||||||||  |||| |||| | || |||||| |||||||||||| || | ||||||||| |||    
T  41572809 cttaggttgacctccaaccatcatcacaagccatctaggctttccggttaacaacacaaaacatccaaggcctattccaataaccattccacatccatat 41572710  T
Q  366 ccaattgccaccggtttccatccaaatccaaatttctcttcactgcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgacc 465  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||| || | | | | |||||||||||||| ||||  | ||||||     
T  41572709 ccaatagccactggtttccatccaaatccaaatttctcttcactccaaaggttgttgggtggaagcggagaatgttgttcaggttcacatttctttgaca 41572610  T
Q  466 aaggtaatccacataactccaagtttccttcataggaatcaattttaaaagtattgaattgctttccctgaggtattt 543  Q
    | || ||||| |||||  |||||||||||||||| || ||| |   ||| |||||||| || ||||| ||||||||||    
T  41572609 agggaaatccgcataatcccaagtttccttcatatgagtcattggaaaatgtattgaactgttttccttgaggtattt 41572532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 471 - 543
Target Start/End: Complemental strand, 41714143 - 41714071
Alignment:
Q  471 aatccacataactccaagtttccttcataggaatcaattttaaaagtattgaattgctttccctgaggtattt 543  Q
    |||||||||||| ||||||||||||||||||||||| || |||| |||||||| |||||||| ||||||||||    
T  41714143 aatccacataaccccaagtttccttcataggaatcatttgtaaatgtattgaactgctttccttgaggtattt 41714071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 42116804 - 42116846
Alignment:
Q  31 aaacttggaattttattatataacacatcttgtggcatgcaca 73  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42116804 aaacttggaattttattatataacacatcttgtggcatgcaca 42116846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 34241466 - 34241407
Alignment:
Q  144 aacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattc 203  Q
    |||| |||| |||||||||||  | || |||||||||| |||||||||||||||||||||    
T  34241466 aacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatctgattc 34241407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 34233688 - 34233634
Alignment:
Q  149 acaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattc 203  Q
    |||| |||||||||||  | || |||||||||| |||||||||||||||||||||    
T  34233688 acaatagagaaaataaccagaataataaaactatgacatttgcaccatctgattc 34233634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 149 - 532
Target Start/End: Complemental strand, 25523943 - 25523558
Alignment:
Q  149 acaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctgatttgtgattgaactttggttcctcctcattcttgtc 248  Q
    |||||||||||||||| || ||||||||| ||| |||||||||| |||||||||||||||||||||  ||  || ||  || ||||||||||||||||||    
T  25523943 acaaaagagaaaataactaaaacaataaa-ctatgacatttgcatcatctgattctgattctgattcatggctgtaccatgattcctcctcattcttgtc 25523845  T
Q  249 cttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatca 348  Q
    ||| |||||||  | |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  25523844 ctttttttcacctttctcttaggctgaccgccaaatatcatcacaagccatctaggctttccaactaaaaacatacaatatccaatgcctattccaatca 25523745  T
Q  349 caaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcactgcaaaag---ttgttggctgaaggtgcaaaatgttgttc 445  Q
     |||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| ||||||   ||||||| |||||||| | ||||||||||    
T  25523744 gaaatccacatccatatccaattaccaccggtatccatccaaatccaaatttctcttcactccaaaagtttttgttgggtgaaggtggagaatgttgttc 25523645  T
Q  446 aggtccacacatttttgaccaaggtaatccacataactccaagtttccttcataggaatcaattttaaaagtattgaattgctttcc 532  Q
    | |||||||  | |||||| | || |||||||||||| ||||||||||||||||||||||| || |||| || ||||||||||||||    
T  25523644 aagtccacatctctttgacaagggaaatccacataaccccaagtttccttcataggaatcatttgtaaatgtgttgaattgctttcc 25523558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 113 - 543
Target Start/End: Original strand, 11117289 - 11117720
Alignment:
Q  113 tcaagcttgttttaa-cagaaagtaaaaacccaacagacaaaagagaaaataaatacaacaataaaactacgacatttgcaccatctgattctgattctg 211  Q
    |||||||| |||||| ||||||||||||| ||||||  |||  |||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||      
T  11117289 tcaagcttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattctgattca- 11117387  T
Q  212 atttgtgattgaactttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttcca 311  Q
         || ||||||  ||    ||||||| |||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11117388 -----tgtttgaaccatgtgcgctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcatgacaagccatctaggctttcca 11117482  T
Q  312 attaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctcttcact-- 409  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||| |      
T  11117483 attaaaaacatataatatccaatgcttattccaatcacaaatccacatgcatatccaattgccactgctttccatccaaatccaaatttctcttcattcc 11117582  T
Q  410 ----gcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaccaaggtaatccacataactccaagtttccttcataggaatc 505  Q
        | || |||||||||||||||||| | |||||||||||||||||||  | |||||| | ||||||||||||||| |  | |||||||||||||||||    
T  11117583 aagaggaagagttgttggctgaaggtggagaatgttgttcaggtccacatttctttgacaagggtaatccacataaccctgaatttccttcataggaatc 11117682  T
Q  506 aattttaaaagtattgaattgctttccctgaggtattt 543  Q
    | || |||| ||||||||||||||||| ||||||||||    
T  11117683 atttgtaaatgtattgaattgctttccttgaggtattt 11117720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 204 - 506
Target Start/End: Complemental strand, 11995256 - 11994951
Alignment:
Q  204 tgattctgatttgtgattgaactttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctag 303  Q
    |||||||||||  || ||| ||  |||||||| |||| |||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  11995256 tgattctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctag 11995157  T
Q  304 gctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctc 403  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  11995156 gctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccactggtttccatccaaatccaaatttctc 11995057  T
Q  404 ttcactgcaaaa---gttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaccaaggtaatccacataactccaagtttccttcatag 500  Q
    ||||||  ||||   |||||||| |||||||| | || ||||||||||||| ||| | |||||| | || ||| |||||||||||||||||||| ||||     
T  11995056 ttcactcgaaaagctgttgttgggtgaaggtggagaacgttgttcaggtccgcacttctttgacaagggaaattcacataactccaagtttcctacatat 11994957  T
Q  501 gaatca 506  Q
    ||||||    
T  11994956 gaatca 11994951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 204 - 506
Target Start/End: Original strand, 12247674 - 12247979
Alignment:
Q  204 tgattctgatttgtgattgaactttggttcctcctcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctag 303  Q
    |||||||||||  || ||| ||  |||||||| |||| |||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  12247674 tgattctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctag 12247773  T
Q  304 gctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttccatccaaatccaaatttctc 403  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  12247774 gctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccaccggtttccatccaaatccaaatttcgc 12247873  T
Q  404 ttcactgcaaaa---gttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaccaaggtaatccacataactccaagtttccttcatag 500  Q
     || || |||||   ||||||   |||||||  | ||| |||||||||||||||| | |||||| | || |||||||||||||||||||||||| ||||     
T  12247874 gtcgctccaaaagctgttgttaagtgaaggttgagaatattgttcaggtccacacttctttgacaagggaaatccacataactccaagtttcctacatat 12247973  T
Q  501 gaatca 506  Q
    ||||||    
T  12247974 gaatca 12247979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 253 - 369
Target Start/End: Complemental strand, 32682497 - 32682381
Alignment:
Q  253 ttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaa 352  Q
    |||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  32682497 ttttcactcttctcttaggatgaccaccaattatcatcacaagccatctaggctttccaattaaaaacataaagtatccaatgcctattccaatcacaaa 32682398  T
Q  353 tccacatccgtatccaa 369  Q
    ||||||||| |||||||    
T  32682397 tccacatccatatccaa 32682381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 285 - 413
Target Start/End: Complemental strand, 9423506 - 9423378
Alignment:
Q  285 atcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccaccggtttcc 384  Q
    ||||| ||| |||||||||||||||||||||| | |||| || |||||| |||| |||||| ||| | ||||||||| |||||||||||||| | |||||    
T  9423506 atcatcacaggccatctaggctttccaattaacagcatacaacatccaaggccttttccaagcaccattccacatccatatccaattgccactgatttcc 9423407  T
Q  385 atccaaatccaaatttctcttcactgcaa 413  Q
    ||||||||||||||||||||||| |||||    
T  9423406 atccaaatccaaatttctcttcattgcaa 9423378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 32682393 - 32682349
Alignment:
Q  384 catccaaatccaaatttctcttcactgcaaaagttgttggctgaa 428  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||    
T  32682393 catccatatccaaatttctcttcactccgaaagttgttggctgaa 32682349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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