View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_9 (Length: 478)
Name: NF20367_low_9
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Original strand, 35166223 - 35166674
Alignment:
| Q |
16 |
aaaagtgttgcaacctggttgagatcatgaccgttgttataccagacaaaataccaatggtcagttgcaagtgacaacccaaaataaaaaacgagggatc |
115 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35166223 |
aaaagtgttgcaacctgtttgagatcatgaccgttgtaataccatacaaaataccaatggtcaattgcaagtgacaacccaaaataaaaaacgagggatc |
35166322 |
T |
|
| Q |
116 |
cgagtctttgtgcaagtttcgtgacaatgccaaacaacatgtgttatgcaatgttctactcagnnnnnnnncctctcttccattctatcccttacatctc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||| |
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| T |
35166323 |
cgagtctttgtgcaagtttcgtgacaatgccaaacaacatgtgttgtgcaatgttctactcagtttttttccc-ctcttccattctatccctttcttctc |
35166421 |
T |
|
| Q |
216 |
cgttaagcagcaaccatctgccacccattaaacagaactgaccgtttagattctccaagcataaaaaatacttaattgatactagtttgtatactataca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35166422 |
cgttaagcagcaaccatctgccacccattaaacagaactgaccgttcagattctccaagcataaaaaatacttaattgatactagtttgtatactataca |
35166521 |
T |
|
| Q |
316 |
ctttttag-gaaaaaataccatcgatcaaaatttaaaagaaatttgactctaattgccgtcgtttaaatttagagatttgacaagtgtacaggggggatt |
414 |
Q |
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|||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
35166522 |
ctttttagaaaaaaaataccatcgataaaaattt---agaaatttgactctaattgccgtcgtttaaatttagagatttgacacgtgtaca-cggggatt |
35166617 |
T |
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| Q |
415 |
gcgtgcaatgatgtgatttcttcaaaagtggcactaatgctccatcaaattcatctc |
471 |
Q |
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| T |
35166618 |
gcgtgcactaatttgatttcttcaaaagtggcactaatgctccatcaaattcatctc |
35166674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 44791388 - 44790937
Alignment:
| Q |
16 |
aaaagtgttgcaacctggttgagatcatgaccgttgttataccagacaaaataccaatggtcagttgcaagtgacaacccaaaataaaaaacgagggatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44791388 |
aaaagtgttgcaacctggttgagatcatgaccgttgtaataccatacaaaataccaatggtcaattgcaagtgacaacccaaaataaaaaacgagggatc |
44791289 |
T |
|
| Q |
116 |
cgagtctttgtgcaagtttcgtgacaatgccaaacaacatgtgttatgcaatgttctactcagnnnnnnnncctctcttccattctatcccttacatctc |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||| |
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| T |
44791288 |
cgagtctttgtgcaagtttcgtgacaaggccaaacaacatgtgttgtgcaatgttctactcagttttttcccc-ctcttccattctatccctttcttctc |
44791190 |
T |
|
| Q |
216 |
cgttaagcagcaaccatctgccacccattaaacagaactgaccgtttagattctccaagcataaaaaatacttaattgatactagtttgtatactataca |
315 |
Q |
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| ||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
44791189 |
cattaagcagcaaccatctgccacctattaaacaggactgaccgttcagattctccaagcattaaaa-tacttaattgatactagtttgtatactataca |
44791091 |
T |
|
| Q |
316 |
ctttttaggaaaaaataccatcgatcaaaatttaaaagaaatttgactctaattgccgtcgtttaaatttagagatttgacaagtgtacaggggggattg |
415 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
44791090 |
ctttttagaaaaaaataccatcgatcaaaatttagaagaaatttgactctaattgccatcgtttaaatttagagatttgacaagtgtaca--ggggattg |
44790993 |
T |
|
| Q |
416 |
cgtgcaatgatgtgatttcttcaaaagtggcactaatgctccatcaaattcatctc |
471 |
Q |
| |
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|||||| | | ||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
44790992 |
cgtgcactaaagtgatttcttcaaaagttgcgctaatgctccatcaaattcatctc |
44790937 |
T |
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