View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20368_high_3 (Length: 320)
Name: NF20368_high_3
Description: NF20368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20368_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 8274832 - 8274580
Alignment:
| Q |
13 |
cagagactaataaaatgagtcacatgtaaagggaccnnnnnnncagtcctgttttagacttggtttgtctctctttcctatatctcgaggagatggatta |
112 |
Q |
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| T |
8274832 |
cagagactaataaaatgagtcacatgtaaagggaccaaaaacacagtcctgttttagacttggtttgtctctctttcctatatctcgaggagatggatta |
8274733 |
T |
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| Q |
113 |
gattggatgaggaacaagacgaaattgtacattatcaaaacaagagggatctttctttaggacaaataataatttatttttataaaaaatatgaataaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8274732 |
gattggatgaggaacaagacgaaattgtacattatcaaaagaagagggatctttctttaggacaaataataatttatttttataaaaaataagaataaga |
8274633 |
T |
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| Q |
213 |
taagaaacagcatcatcatcatggaattggatggctgtcaatgtcctagacta |
265 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8274632 |
taagaaatagcatcatcatcatggaattggatggctgtcaatgtcctagacta |
8274580 |
T |
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