View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20368_high_4 (Length: 283)
Name: NF20368_high_4
Description: NF20368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20368_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 55456229 - 55455978
Alignment:
| Q |
19 |
atgacaacatacactcctgactttcttaacttaccaaaaggattatgggcacaagaaggaggtgacaaaaatgcaggtgatggaattgttattggtattg |
118 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55456229 |
atgacaacatacactcctgattttcttaacttgccaaaaggattatgggcacaagtaggaggtgacaaaaatgcaggtgatggaattgttattggtattg |
55456130 |
T |
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| Q |
119 |
ttgatagtggcattaatccaattcatccaagctttgcttaccaacctttcacttcaaatatctctcacttttctggtgcttgtgagactggtccacattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55456129 |
ttgatagtggcattaatccaattcatccaagctttgcttaccaacctttcacttcaaatatctctcacttttctggtgcttgtgagactggtccacattt |
55456030 |
T |
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| Q |
219 |
cccacctggttcttgcaatggaaagattatttcagctaaatatttctctgct |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55456029 |
cccacctggttcttgcaatggaaagattatttcagctaaatatttctctgct |
55455978 |
T |
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