View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_high_12 (Length: 292)
Name: NF20369_high_12
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_high_12 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 49247644 - 49247507
Alignment:
| Q |
137 |
atcaaattattagattccaatatagaattttgtacaatattttaattttgttgtcctctcaaataagaaaatcatggaagatatcatatctctagctttt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49247644 |
atcaaattattagattccaatatagaattttgtacaatattttaattttgttgtcctctcaaataagaaaatcatggaagatatcatatctctagctttt |
49247545 |
T |
|
| Q |
237 |
ctgcccatagtttcctactgcaagtctaatggcataag |
274 |
Q |
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| T |
49247544 |
ctgcccatagtttcctactgcaagtctaatggcataag |
49247507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 31698378 - 31698245
Alignment:
| Q |
4 |
gaatgttagaagaaaggggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagagg |
103 |
Q |
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| T |
31698378 |
gaatgttagaagaaaggggcacgtgaaatctcatttttacccttaactttttaacaacactacaaaattgccatccacatgggcatgtgtataagagagg |
31698279 |
T |
|
| Q |
104 |
tgtaggaaagggtgtgtctataaaacatttccca |
137 |
Q |
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| T |
31698278 |
tgtagaaaatggtatgtctatgaaacatttccca |
31698245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 8726142 - 8726251
Alignment:
| Q |
4 |
gaatgttagaagaaaggggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagagg |
103 |
Q |
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| T |
8726142 |
gaatgttagaagaaaggggcacgtgaaatctcatttttacccttaactttttaacaatactacaaaattgccatccacatgggcatgtgtataa-agagg |
8726240 |
T |
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| Q |
104 |
tgtaggaaagg |
114 |
Q |
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||||| ||||| |
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| T |
8726241 |
tgtagaaaagg |
8726251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 42838206 - 42838094
Alignment:
| Q |
21 |
ggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagaggtgtaggaaagggtgtgt |
120 |
Q |
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|||||||||||| ||| |||||||| | ||||||||||| | |||||| || |||||||||||||| ||||||||||| ||| | |||| |||||| |
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| T |
42838206 |
ggcacgtgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataagaggggtacaagaaaaagtgtgt |
42838107 |
T |
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| Q |
121 |
ctataaaacattt |
133 |
Q |
| |
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|||| || ||||| |
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| T |
42838106 |
ctatgaatcattt |
42838094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 34279550 - 34279680
Alignment:
| Q |
6 |
atgttagaagaaaggggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagaggtg |
105 |
Q |
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| T |
34279550 |
atgttagaagagaggggcatgtgaaatctcatttttacccttaactttttaacaatactacaaaattgccatccacatgggcatgtgtataaaagaggtg |
34279649 |
T |
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| Q |
106 |
taggaaagggtgtgtctataaaacatttccc |
136 |
Q |
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| T |
34279650 |
tagaaaagggtgtgtctatgaatcatttccc |
34279680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 7237770 - 7237843
Alignment:
| Q |
27 |
tgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagag |
100 |
Q |
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| T |
7237770 |
tgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataagag |
7237843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 41366 - 41295
Alignment:
| Q |
34 |
tcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagaggtg |
105 |
Q |
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| T |
41366 |
tcatttttacccctgactttttaacaatattacataactgccatccacatgggcatgtgtacaagagaggtg |
41295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 25352409 - 25352509
Alignment:
| Q |
4 |
gaatgttagaagaaaggggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagagg |
103 |
Q |
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||||||||||||||| || | ||||||| |||||||||||| | | |||||||||||| ||||||| | ||||||||| | |||||||| |||||||| |
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| T |
25352409 |
gaatgttagaagaaatggtaatgtgaaatctcatttttacccctgattttttaacaatattacaaaactaccatccacatagacatgtgtacaagagagg |
25352508 |
T |
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| Q |
104 |
t |
104 |
Q |
| |
|
| |
|
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| T |
25352509 |
t |
25352509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 22501958 - 22501846
Alignment:
| Q |
21 |
ggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagagaggtgtaggaaagggtgtgt |
120 |
Q |
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|||||||||||| ||| |||||||| | ||||||||||| | |||||| || |||||||||||||| ||||||||||| ||| | |||| |||||| |
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| T |
22501958 |
ggcacgtgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataagaggggtacaagaaaaagtgtgt |
22501859 |
T |
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| Q |
121 |
ctataaaacattt |
133 |
Q |
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|||| || ||||| |
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| T |
22501858 |
ctatgaatcattt |
22501846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 24768427 - 24768348
Alignment:
| Q |
21 |
ggcacgtgaaatatcatttttacccttaactttttaacaatactacaaaattgtcatccacatgggcatgtgtataagag |
100 |
Q |
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|||||||||||| ||| ||||||| | ||||||||||| | |||||| || |||||||||||||| ||||||||||| |
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| T |
24768427 |
ggcacgtgaaatctcaattttacctcttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataagag |
24768348 |
T |
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