View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20369_high_19 (Length: 250)

Name: NF20369_high_19
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20369_high_19
NF20369_high_19
[»] chr4 (3 HSPs)
chr4 (5-250)||(15555983-15556228)
chr4 (33-172)||(35155417-35155556)
chr4 (33-160)||(35162438-35162564)
[»] chr3 (9 HSPs)
chr3 (92-228)||(47414124-47414260)
chr3 (90-248)||(45883644-45883804)
chr3 (33-247)||(46473928-46474142)
chr3 (33-247)||(46484047-46484261)
chr3 (92-246)||(5160332-5160486)
chr3 (35-136)||(46549010-46549111)
chr3 (33-247)||(46479789-46480003)
chr3 (35-174)||(46236782-46236921)
chr3 (93-172)||(46544531-46544610)
[»] chr8 (2 HSPs)
chr8 (92-172)||(9675683-9675763)
chr8 (33-172)||(9692705-9692844)
[»] chr7 (2 HSPs)
chr7 (34-130)||(17708273-17708369)
chr7 (34-130)||(17718097-17718193)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 15555983 - 15556228
Alignment:
Q  5 gagcagcagagaggatcaatacattggtgcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctac 104  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15555983 gagcagcaaagaggatcaatatattggtgcttttgatggtttcaaagtactttgtcttcattataaacaaggccaatatgatcgccgattctctatctac 15556082  T
Q  105 tttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15556083 tttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtca 15556182  T
Q  205 aagttggtgacttcagaattccaaagttcaatatctcatttgggtt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15556183 aagttggtgacttcagaattccaaagttcaatatctcatttgggtt 15556228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 35155417 - 35155556
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| ||||||  |||||  ||||  || |||| ||   ||||||||| ||| || |||||||| |||||||||||||||    
T  35155417 gcttttgatggttttaaagttcttcgtcttccgtataagcaaggaaaagatgagcggaaattctctatgtacatttttcttccaaatgcaaaagatggac 35155516  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagtt 172  Q
    | || ||||||||||| ||||||||||| |||| ||||||    
T  35155517 tatcagctttggttgagaaggtggcttctgaatttgagtt 35155556  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 35162438 - 35162564
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| |||||| ||||||  ||||  || |||| ||   ||||||||| ||| || |||||||| ||||||||||||| |    
T  35162438 gcttttgatggttttaaagttcttcgtcttccttataagcaaggaaaagatgagcggaaattctctatgtacatt-ttcttccaaatgcaaaagatggcc 35162536  T
Q  133 tctcggctttggttgaaaaggtggcttc 160  Q
    | || ||||||||||| |||||||||||    
T  35162537 tgtcagctttggttgagaaggtggcttc 35162564  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 47414260 - 47414124
Alignment:
Q  92 attctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaat 191  Q
    ||||||||| ||| || |||||||| |  ||| ||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||  ||| || ||    
T  47414260 attctctatgtacatttttcttccaaacacaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttcat 47414161  T
Q  192 ctttctaaagtcaaagttggtgacttcagaattccaa 228  Q
    ||||||||||||||||| |||||||||||||||||||    
T  47414160 ctttctaaagtcaaagtaggtgacttcagaattccaa 47414124  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 248
Target Start/End: Complemental strand, 45883804 - 45883644
Alignment:
Q  90 cgattctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacac--cgtaagtt 187  Q
    ||||||||||| |||||| |||||||| |||||||||||||||| || |||||||| || ||||||||||| ||||||   |||||||||  |  ||| |    
T  45883804 cgattctctatgtacttttttcttccaaatgcaaaagatggactgtcagctttggtcgagaaggtggcttctgaatctacattactacaccacaaaagct 45883705  T
Q  188 taatctttctaaagtcaaagttggtgacttcagaattccaaagttcaatatctcatttggg 248  Q
    |  || ||||||||||||||| |||||||||||||||||||  |||||| | |||||||||    
T  45883704 ttgtcattctaaagtcaaagtaggtgacttcagaattccaagattcaatgtttcatttggg 45883644  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 46473928 - 46474142
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| |||||| ||||||  ||||| || || | || || ||| |||| |||||| |||||||| ||||||||||||| |    
T  46473928 gcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggc 46474027  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagttggtgacttcagaattccaaagtt 232  Q
    |  |   ||||||||||||||||||||| |||||||| |||||||| |  ||| ||  | ||  ||||||  |||| |||||||| || |||||||||||    
T  46474028 ttccaagtttggttgaaaaggtggcttctgaatctgatttactacaacacaagcttccttttgataaagtggaagtaggtgactttaggattccaaagtt 46474127  T
Q  233 caatatctcatttgg 247  Q
    |||||| ||||||||    
T  46474128 caatatttcatttgg 46474142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 46484047 - 46484261
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| |||||| ||||||  ||||| || || | || || ||| |||| |||||| |||||||| ||||||||||||| |    
T  46484047 gcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggc 46484146  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagttggtgacttcagaattccaaagtt 232  Q
    |  |   ||||||||||||||||||||| |||| ||| |||||||| |  ||| ||  | ||  ||||||  |||| |||||||| || |||||||||||    
T  46484147 ttccaagtttggttgaaaaggtggcttctgaatttgatttactacaacacaagcttccttttgataaagtggaagtaggtgactttaggattccaaagtt 46484246  T
Q  233 caatatctcatttgg 247  Q
    |||||| ||||||||    
T  46484247 caatatttcatttgg 46484261  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 246
Target Start/End: Original strand, 5160332 - 5160486
Alignment:
Q  92 attctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaat 191  Q
    ||||||||| ||| || | |||||| |||||||||||||  | ||| |||||||| | ||||||||||| |||||||||||||||||||  | |||| ||    
T  5160332 attctctatgtacattttccttccaaatgcaaaagatggcttgtcgactttggttaagaaggtggcttctgaatctgagttactacaccacaggtttcat 5160431  T
Q  192 ctttctaaagtcaaagttggtgacttcagaattccaaagttcaatatctcatttg 246  Q
    ||| || |||   |||| ||||| |||||||||||||  ||||| || |||||||    
T  5160432 cttcctgaagaagaagtaggtgaattcagaattccaagattcaaaatttcatttg 5160486  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 46549111 - 46549010
Alignment:
Q  35 ttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggactc 134  Q
    |||||||||||||||||| |||| ||||| ||||||||||||  || || | || | ||||||||| |||||| |||||||| || ||||||||||||||    
T  46549111 ttttgatggtttcaaagttctttatcttccttataaataaggaaaagataaacgacaattctctatgtacttttttcttccaaatacaaaagatggactc 46549012  T
Q  135 tc 136  Q
    ||    
T  46549011 tc 46549010  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 46479789 - 46480003
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||  |||||| ||||||  ||||| || || | || | |||| | || |||||| |||||||| |||||||||||||      
T  46479789 gcttttgatggttttaaagttctcggtcttccttataagcaaggcgaagataagcgtcaattcaccatgtacttttttcttccaaatgcaaaagatgggt 46479888  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagttggtgacttcagaattccaaagtt 232  Q
    |  | |||||||| |||||||||||||| ||||||||| |||| || |  ||| ||    ||  ||||||  |||| |||||||| || |||||||||||    
T  46479889 tggcagctttggtcgaaaaggtggcttctgaatctgagctactgcaacacaagcttccatttggtaaagtggaagtaggtgactttaggattccaaagtt 46479988  T
Q  233 caatatctcatttgg 247  Q
    |||||| ||||||||    
T  46479989 caatatttcatttgg 46480003  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 46236921 - 46236782
Alignment:
Q  35 ttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggactc 134  Q
    |||||||||||  ||||| |||| ||||| ||||||  ||||| || ||||  | | ||||||||| ||  || ||||||||||||||||||||||  |     
T  46236921 ttttgatggttataaagttctttatcttccttataatcaaggcaaagatgagtgtcaattctctatgtatatttttcttccagatgcaaaagatgggttg 46236822  T
Q  135 tcggctttggttgaaaaggtggcttcagaatctgagttac 174  Q
    ||  | |||||||| ||| ||||||| |||| ||||||||    
T  46236821 tcaaccttggttgagaagctggcttctgaatttgagttac 46236782  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 46544531 - 46544610
Alignment:
Q  93 ttctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagtt 172  Q
    |||||||| |||||| ||||||| ||||||||||||||  | |  ||||||  ||||||||| ||||| |||||||||||    
T  46544531 ttctctatttacttttttcttcctgatgcaaaagatgggttgttagctttgactgaaaaggtagcttctgaatctgagtt 46544610  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 9675763 - 9675683
Alignment:
Q  92 attctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagtt 172  Q
    ||||||||| ||| || |||||||| ||||||||| |||||| |||||| ||||||||||||||||||| |||| ||||||    
T  9675763 attctctatgtacatttttcttccaaatgcaaaaggtggactatcggctatggttgaaaaggtggcttctgaatttgagtt 9675683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 9692844 - 9692705
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| |||||| |||||| |||||  || || | || | ||||||||| ||| || |||||||| |||||||||||| ||    
T  9692844 gcttttgatggttttaaagttcttcgtcttccttataattaaggaaaaaataagcgacaattctctatgtacatttttcttccaaatgcaaaagatgtac 9692745  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagtt 172  Q
    | |  ||| ||||||| || |||||||| |||| ||||||    
T  9692744 tattagctatggttgagaaagtggcttctgaatttgagtt 9692705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 17708273 - 17708369
Alignment:
Q  34 cttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatgg 130  Q
    ||||||||||||| ||||| ||| |||||| ||| ||| ||||| | ||||  ||   |||||| || |||||| ||||||| ||||||||||||||    
T  17708273 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttacttttttcttcccgatgcaaaagatgg 17708369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 17718097 - 17718193
Alignment:
Q  34 cttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatgg 130  Q
    ||||||||||||| ||||| ||| |||||| ||| ||| ||||| | ||||  ||   |||||| || |||||| ||||||| ||||||||||||||    
T  17718097 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttacttttttcttcccgatgcaaaagatgg 17718193  T

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