View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_high_20 (Length: 248)
Name: NF20369_high_20
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_high_20 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 39034055 - 39034285
Alignment:
| Q |
18 |
aacgtgtaacaaaggtgtaaccacattttagttttatgaccaattgtctctttctcttcatttctccatgtgattatattaaaaggaatgttttgatggg |
117 |
Q |
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| T |
39034055 |
aacgtgtaacaaaggtgtaaccaagttttagttttatgatcaattgtctctttctcaccatttctccatgtgattatattaaaaggaatgtttttatggg |
39034154 |
T |
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| Q |
118 |
atacacttgtgattttttacggatgataataaagtgaggtgaatgattttcattgtttgacgggctttaggaaaactatccaaaaattatctgcatttaa |
217 |
Q |
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| T |
39034155 |
acacacttgtgattttttactaatgataataaagggaggtgaatgattttcattgtttgacaggctttaggaaaactatccaaaaattatttgcatttaa |
39034254 |
T |
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| Q |
218 |
ccattttttaacaaaggtgtaaccacatttt |
248 |
Q |
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| T |
39034255 |
ccattttttaacaaaggtgtaaccacatttt |
39034285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 39034263 - 39034310
Alignment:
| Q |
24 |
taacaaaggtgtaaccacattttagttttatgacc-aattgtctcttt |
70 |
Q |
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| T |
39034263 |
taacaaaggtgtaaccacattttattttcatgaccaaattgtctcttt |
39034310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 34165053 - 34165203
Alignment:
| Q |
21 |
gtgtaacaaaggtgtaaccacattttagttttatgaccaattgtctctttctcttcatttctccatgtgattatattaaaaggaatgttttgatgggata |
120 |
Q |
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| T |
34165053 |
gtgtaacaaaggtgtaaccacattttagttttatgaccaattgtctctttctcaccatttctccatgtgattatattaaaaggaatgtttttatgggaca |
34165152 |
T |
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| Q |
121 |
cacttgtgattttttacggatgataataaagtgaggtgaatgattttcatt |
171 |
Q |
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| T |
34165153 |
cgcttgtgattttttagtgatgataataaagtgaggtgaatgattttcatt |
34165203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 38243509 - 38243475
Alignment:
| Q |
214 |
ttaaccattttttaacaaaggtgtaaccacatttt |
248 |
Q |
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| T |
38243509 |
ttaaccaatttttaacaaaggtgtaaccacatttt |
38243475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 14187 - 14138
Alignment:
| Q |
199 |
aaaaattatctgcatttaaccattttttaacaaaggtgtaaccacatttt |
248 |
Q |
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| T |
14187 |
aaaaattatctgcacttaaccatattttaacatagacgtaaccacatttt |
14138 |
T |
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