View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20369_high_23 (Length: 239)

Name: NF20369_high_23
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20369_high_23
NF20369_high_23
[»] chr2 (16 HSPs)
chr2 (9-239)||(39214730-39214960)
chr2 (11-181)||(39601861-39602031)
chr2 (56-182)||(39450414-39450540)
chr2 (65-177)||(39220086-39220198)
chr2 (65-179)||(39199516-39199630)
chr2 (59-182)||(39151816-39151939)
chr2 (68-179)||(39382247-39382358)
chr2 (59-182)||(39458127-39458250)
chr2 (68-178)||(39488225-39488335)
chr2 (10-129)||(44614345-44614464)
chr2 (56-182)||(39399044-39399170)
chr2 (188-238)||(39399051-39399101)
chr2 (59-182)||(39474308-39474431)
chr2 (105-182)||(39416403-39416480)
chr2 (205-238)||(39458210-39458243)
chr2 (40-93)||(39479278-39479331)
[»] chr6 (2 HSPs)
chr6 (186-238)||(16112406-16112458)
chr6 (65-182)||(16112348-16112465)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 39214730 - 39214960
Alignment:
Q  9 gagatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttaga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  39214730 gagatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaacccataaatcattttcctcgctgaagaaagaccttgctatgttaga 39214829  T
Q  109 taaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaagagagatattgggcattgcaagaggaagaggacagta 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39214830 aaaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagatttcagtctctaaagagagatattgggcattgcaagaggaagaggaaagta 39214929  T
Q  209 gaggagaagagattgcagtccataaagagat 239  Q
    |||||||||||||||||||||||||||||||    
T  39214930 gaggagaagagattgcagtccataaagagat 39214960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 39601861 - 39602031
Alignment:
Q  11 gatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagata 110  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||  ||||||| |    
T  39601861 gatgaagatgatattcctttgttggatttaattaaaaggccaagcaaatcaactgataaatcattttcctcgctgaagaaaggccttgcattgttagaaa 39601960  T
Q  111 aattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaagagagatatt 181  Q
    | | |||| ||||| |||| | ||||  | || |||| ||||| |||||||||||  |||||| |||||||    
T  39601961 actcatttcaggaaggcaataagaagacgaaattagaagagaatagattgcagtccataaagatagatatt 39602031  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 39450414 - 39450540
Alignment:
Q  56 aaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaaga 155  Q
    |||| ||| |||||||||||||||| |||||||||||||||| |  ||||||| ||||||||||||||||| |||||||||  | ||||||| || ||||    
T  39450414 aaattaactgataaatcattttcctcgctgaagaaagaccttacattgttagaaaaattatttgaggaatgtaaaaggaagcagaaagtagaagaaaaga 39450513  T
Q  156 gattgcagtctctaaagagagatattg 182  Q
    ||||||||||  | |||| ||||||||    
T  39450514 gattgcagtccatcaagacagatattg 39450540  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 39220086 - 39220198
Alignment:
Q  65 gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt 164  Q
    |||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||| || |||||||||  | |||| || ||||  ||||| ||||    
T  39220086 gataaatcattttcctcgctgaagaaagaccttgcggtgttagaaaaattatttgaggagtgtaaaaggaagcagaaagttgaagagagaagattacagt 39220185  T
Q  165 ctctaaagagaga 177  Q
    |  ||||||||||    
T  39220186 ccataaagagaga 39220198  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 39199630 - 39199516
Alignment:
Q  65 gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt 164  Q
    |||||||||||||||| |||||||||||| ||| |  || ||||  |||||||| |||||||||||||||||  | |||| || ||||| ||||||||||    
T  39199630 gataaatcattttcctcgctgaagaaagagcttacgctgctagaagaattatttaaggaatgcaaaaggaagcagaaagttgaagagaaaagattgcagt 39199531  T
Q  165 ctctaaagagagata 179  Q
    |  ||||||||||||    
T  39199530 ccataaagagagata 39199516  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 39151816 - 39151939
Alignment:
Q  59 tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat 158  Q
    ||||| ||||||||| ||||||||||||||||||| |||||  |  | || |||| | |||| ||||||||||||||   ||||||||| |||||||||     
T  39151816 tcaactgataaatcaatttccttgctgaagaaagagcttgcatttgtggaaaaatcaattgatgaatgcaaaaggaaaaggcaagtagaagagaagagac 39151915  T
Q  159 tgcagtctctaaagagagatattg 182  Q
    |||||||  |||||||| ||||||    
T  39151916 tgcagtcaataaagagaaatattg 39151939  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 39382358 - 39382247
Alignment:
Q  68 aaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctc 167  Q
    ||||| ||||||| |||||||||||||||| |  |||||||  ||||||||| |||||||||| |||||  | || |||| ||||||||||| |||||      
T  39382358 aaatcgttttcctcgctgaagaaagaccttacgctgttagaagaattatttgtggaatgcaaatggaagcagaaactagaagagaagagattacagtcca 39382259  T
Q  168 taaagagagata 179  Q
    ||||||||||||    
T  39382258 taaagagagata 39382247  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 39458127 - 39458250
Alignment:
Q  59 tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat 158  Q
    ||||| ||| ||||||||| || |||||||||||| ||  |  || |||| |||| ||||||||| |||||||||| |   |||||||| ||||||||||    
T  39458127 tcaactgatgaatcatttttctcgctgaagaaagaactcacattggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagat 39458226  T
Q  159 tgcagtctctaaagagagatattg 182  Q
    |||||||  |||||||||||||||    
T  39458227 tgcagtccataaagagagatattg 39458250  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 39488335 - 39488225
Alignment:
Q  68 aaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctc 167  Q
    |||||||||||||||||||| ||||| |||||  || |||| |  | |||||||||||||||||||||   ||||||||| |||  |||| ||||||||     
T  39488335 aaatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagaggggagactgcagtcta 39488236  T
Q  168 taaagagagat 178  Q
    |||||||||||    
T  39488235 taaagagagat 39488225  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 44614345 - 44614464
Alignment:
Q  10 agatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagat 109  Q
    ||||||||||||||||| || || | || ||| ||||||| ||||||||||| | ||||  |||||||||| ||||| |||||| |||||   |||| |     
T  44614345 agatgaagatgatattccttcgttgaatataaataaaaggtcaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttaaaa 44614444  T
Q  110 aaattatttgaggaatgcaa 129  Q
    |||| |||||||||||||||    
T  44614445 aaatcatttgaggaatgcaa 44614464  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 39399170 - 39399044
Alignment:
Q  56 aaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaaga 155  Q
    |||||| | |||||||||||||| | ||| ||||||||  ||    || |||| ||||| ||| || ||||||||||||||  | ||||||| |||||||    
T  39399170 aaatcagctgataaatcattttcatcgctcaagaaagaagttaaattggtagaaaaattgtttaagaaatgcaaaaggaagaggaaagtagaagagaaga 39399071  T
Q  156 gattgcagtctctaaagagagatattg 182  Q
    ||||||||||  |||||||||||||||    
T  39399070 gattgcagtccataaagagagatattg 39399044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 39399101 - 39399051
Alignment:
Q  188 tgcaagaggaagaggacagtagaggagaagagattgcagtccataaagaga 238  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  39399101 tgcaaaaggaagaggaaagtagaagagaagagattgcagtccataaagaga 39399051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 39474431 - 39474308
Alignment:
Q  59 tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat 158  Q
    ||||| ||||||||||||||||  || |||||||| |||||  |  |||| |||| ||||||||| ||| |||||| |  |||| ||||  || ||||||    
T  39474431 tcaacggataaatcattttcctcactcaagaaagaacttgcatttgtagaaaaatcatttgaggattgccaaaggacgacgcaaatagaaaaggagagat 39474332  T
Q  159 tgcagtctctaaagagagatattg 182  Q
    |||| ||  |||||||||||||||    
T  39474331 tgcattccataaagagagatattg 39474308  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 39416480 - 39416403
Alignment:
Q  105 tagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaagagagatattg 182  Q
    |||| |||| |||||||||| ||| |||| |  ||||||||||  ||||||||||||| ||  |||||||||||||||    
T  39416480 tagaaaaatcatttgaggaacgcagaagggacatgcaagtagaaaagaagagattgcattccataaagagagatattg 39416403  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 39458210 - 39458243
Alignment:
Q  205 agtagaggagaagagattgcagtccataaagaga 238  Q
    |||||| |||||||||||||||||||||||||||    
T  39458210 agtagaagagaagagattgcagtccataaagaga 39458243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 39479331 - 39479278
Alignment:
Q  40 aattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaaga 93  Q
    |||||||||| | || ||||| || |||||||||||||||| ||||||||||||    
T  39479331 aattaaaaggtcgggaaaatcgactgataaatcattttcctcgctgaagaaaga 39479278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 16112406 - 16112458
Alignment:
Q  186 attgcaagaggaagaggacagtagaggagaagagattgcagtccataaagaga 238  Q
    ||||||| ||||||||||||| ||| ||||||| |||||||||||||||||||    
T  16112406 attgcaaaaggaagaggacagaagaagagaagaaattgcagtccataaagaga 16112458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 16112348 - 16112465
Alignment:
Q  65 gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt 164  Q
    |||||||||||||||| ||||||||| ||  ||  | || |||| ||||| ||| || | ||||||||||||  |  || ||| ||||||| ||||||||    
T  16112348 gataaatcattttcctcgctgaagaatgaagttaatttggtagaaaaattgtttaagaattgcaaaaggaagaggacagaagaagagaagaaattgcagt 16112447  T
Q  165 ctctaaagagagatattg 182  Q
    |  |||||||||||||||    
T  16112448 ccataaagagagatattg 16112465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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