View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_high_5 (Length: 470)
Name: NF20369_high_5
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 5674636 - 5675072
Alignment:
| Q |
13 |
cagagacacatgcattcactttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcaatggttttttcgacaaatttatt |
112 |
Q |
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| T |
5674636 |
cagagacacatgcattcattttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcgatggttttttcgacaaatttatt |
5674735 |
T |
|
| Q |
113 |
caccttattgagagtatgcttagataggagaaaatcatgttcatctattttttctttgtgggtgtaattaccacttgtacttatcacaatatatgagagt |
212 |
Q |
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| T |
5674736 |
caccttattgagagtatgcttagataggagaaaatcatgttcatctattttttct--gtgggtgtaattaccacttgtacttatcacaatatatgagagt |
5674833 |
T |
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| Q |
213 |
agtacaccaacaaggttgcaatgcaatccaactcaagaattatattttatttttcaccaccaccctttacaatatggttcccactttaacatcgtgatga |
312 |
Q |
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| T |
5674834 |
agtacaccaacaaggttgcaatgcaatccaactcaagaattatattttatttttcaccaccaccctttacaatatggttcccactttaacatcgtgatga |
5674933 |
T |
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| Q |
313 |
cataatttacacagaatcacacaaatgaagcaaaaacaaaactagaaaacatagtactcctgtatttattttcatgacctcaggaaatagagtgtcgtcg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5674934 |
cataatttacacagaatcacacaaatgaagcaaaaacaaaactagaaaacatagtactcctgtatttattttcatgacctcaggaaatagagtgtcgtcg |
5675033 |
T |
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| Q |
413 |
attcttgtttggttttgttttacctttagcagatacaat |
451 |
Q |
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| T |
5675034 |
attcttgtttggttttattttacctttagcagatacaat |
5675072 |
T |
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