View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20369_high_6 (Length: 447)

Name: NF20369_high_6
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20369_high_6
NF20369_high_6
[»] chr1 (2 HSPs)
chr1 (12-430)||(5131124-5131541)
chr1 (305-361)||(26324131-26324187)
[»] chr7 (2 HSPs)
chr7 (219-430)||(48361390-48361601)
chr7 (219-416)||(35780184-35780381)
[»] chr5 (20 HSPs)
chr5 (219-416)||(8535872-8536069)
chr5 (219-430)||(8529294-8529505)
chr5 (223-430)||(1599842-1600049)
chr5 (304-415)||(8641752-8641863)
chr5 (220-385)||(8637275-8637440)
chr5 (219-430)||(2856425-2856636)
chr5 (220-430)||(9003820-9004028)
chr5 (219-430)||(2874035-2874246)
chr5 (219-430)||(2844598-2844809)
chr5 (311-430)||(9074356-9074475)
chr5 (219-263)||(2904541-2904585)
chr5 (220-292)||(9074277-9074349)
chr5 (318-385)||(8644620-8644687)
chr5 (303-385)||(8678222-8678305)
chr5 (320-382)||(2904642-2904704)
chr5 (223-261)||(8644744-8644782)
chr5 (225-263)||(11354043-11354081)
chr5 (225-263)||(11373312-11373350)
chr5 (24-76)||(8637669-8637721)
chr5 (227-263)||(8678348-8678384)
[»] chr4 (1 HSPs)
chr4 (219-430)||(9443455-9443666)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Complemental strand, 5131541 - 5131124
Alignment:
Q  12 agagacgagattgagaataaatccaaacgccctcatcgggctgtgagattagctttggagaaaaagaatcagaaagtaatggtgggtaaagaaagggttt 111  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5131541 agagacgagattgagaataaatccaaacaccctcttcgggctgtgagattagctttggagaaaaagaataagaaagtaatggtgggtaaagaaagggttt 5131442  T
Q  112 atattgcttgcaatccagatcatgatagttttcaagttgtgaattcgtgcaagctactacaactcctctcaggttgaaaacaggtcgtgtaactatggta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  5131441 atattgcttgcaatccagatcatgatagttttcaagttgtgaattcgtgcaagttactacaactcctctcaggttgaacacaggtcgtgtaattatggta 5131342  T
Q  212 ggattttctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagc 311  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5131341 ggattttctagttttggtttccaat-taaaactaatgaatataaggtgataaaaatatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagc 5131243  T
Q  312 gtgtgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131242 gtgtgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgt 5131143  T
Q  412 gaatgacacacttcattgg 430  Q
    |||||||||||||||||||    
T  5131142 gaatgacacacttcattgg 5131124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 26324131 - 26324187
Alignment:
Q  305 tttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgtt 361  Q
    ||||||||||||||||||| |||  |||| |||||||||  ||| ||||||||||||    
T  26324131 tttgagcgtgtgatccttgggatgaacacacttggaacaccgtcctggagaaatgtt 26324187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 219 - 430
Target Start/End: Original strand, 48361390 - 48361601
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgat 318  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |  ||||| || |||||||||||||||  |   ||||||||||||||||||||    
T  48361390 ctggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgcgtgggagtttgagcgtgtgat 48361489  T
Q  319 ccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgac 418  Q
    |||||||||| |||| |||||||||   || ||||| |||||||||||||||| ||| |||||| ||||||| || |||| ||| |||||||||||||      
T  48361490 ccttgagataaacacacttggaacaccatcctggaggaatgttgaagtggatcctcacatttctttttcgagtctcgagtatcccacttgtgtgaatggt 48361589  T
Q  419 acacttcattgg 430  Q
     |||||||||||    
T  48361590 gcacttcattgg 48361601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 416
Target Start/End: Complemental strand, 35780381 - 35780184
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgat 318  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||  |  ||||| |||||| ||||| ||    
T  35780381 ctggttttggtttccaacctaaaactaatgaatataaggtgataaaaatatggataagacatgttcaacgtgccaatgattgggtgtttgatcgtgttat 35780282  T
Q  319 ccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatg 416  Q
    ||| || ||| |||| |||||| ||   |||||||||| |||||||||||||| ||  ||||||||||| || ||| ||| ||| |||||||||||||    
T  35780281 cctcgaaataaacacacttggagcaccatcatggagaactgttgaagtggatcctcgtatttctatttcaagccttaagtatcccacttgtgtgaatg 35780184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 219 - 416
Target Start/End: Complemental strand, 8536069 - 8535872
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgat 318  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |  ||||| || |||||||||||||||  |   ||||||||||||||| |||     
T  8536069 ctggttttggtttccaacctaaaactaatgaatataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgtgtgggagtttgagcgtttgac 8535970  T
Q  319 ccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatg 416  Q
    |||||||||| |||| ||||||||    || |||||||||||||||||||||| ||| |||||| ||||||| ||  ||| ||| |||||||||||||    
T  8535969 ccttgagataaacacacttggaaccccatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatg 8535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 219 - 430
Target Start/End: Complemental strand, 8529505 - 8529294
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgat 318  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||     ||| |||| |||||||||| ||||  ||  |||| |||||||||||||||    
T  8529505 ctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgat 8529406  T
Q  319 ccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgac 418  Q
    |||||||||| |||| |||||||||   || |||||||||||||||||||||| ||| |||||| ||||||| ||  ||| ||| |||||||||||||      
T  8529405 ccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggt 8529306  T
Q  419 acacttcattgg 430  Q
     |||||||||||    
T  8529305 gcacttcattgg 8529294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 223 - 430
Target Start/End: Original strand, 1599842 - 1600049
Alignment:
Q  223 ttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgtt-cgttgggagtttgagcgtgtgatcct 321  Q
    ||||||||||||| |||||||||||||||||||||||||||| |   |||| ||  ||||||||||||||  | |||||| ||||| ||  |||||||||    
T  1599842 ttttggtttccaacctaaaactaatgaatataaggtgataaacatgagggtgagatatgttaaacgtgccaatgcgttgg-agtttaagattgtgatcct 1599940  T
Q  322 tgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgacaca 421  Q
    ||||||| |||| |||||||||   || |||||||||||||||||||||| ||| |||||| ||| || |||| ||  ||| |||||||||||||   ||    
T  1599941 tgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccacttgtgtgaatggtgca 1600040  T
Q  422 cttcattgg 430  Q
    |||||||||    
T  1600041 cttcattgg 1600049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 8641863 - 8641752
Alignment:
Q  304 gtttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcct 403  Q
    ||||||||||||||||||||||||| |||| |||||| ||   ||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||     
T  8641863 gtttgagcgtgtgatccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatttcgagtcttaagtatccc 8641764  T
Q  404 acttgtgtgaat 415  Q
    ||||||||||||    
T  8641763 acttgtgtgaat 8641752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 220 - 385
Target Start/End: Complemental strand, 8637440 - 8637275
Alignment:
Q  220 tggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgatc 319  Q
    |||||||||||||||| ||||||||||||||||||||||||||| || |||||  ||  |||||||||| | |  |||||||| |||||| ||| || ||    
T  8637440 tggttttggtttccaacctaaaactaatgaatataaggtgataagaatatggggcagtgatgttaaacgaggcaatcgttgggtgtttgatcgtatggtc 8637341  T
Q  320 cttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatt 385  Q
    ||||||||| | || |||||||||   ||||||||||||| |||||||||||  || |||||||||    
T  8637340 cttgagatatatacacttggaacaccatcatggagaaatgctgaagtggatccccaaatttctatt 8637275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 430
Target Start/End: Original strand, 2856425 - 2856636
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgat 318  Q
    ||||||||||||||||| | ||||||||||||||||||||||| | ||  |||   |   |||||| ||| | |  ||||| || ||||||||||||  |    
T  2856425 ctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagt 2856524  T
Q  319 ccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgac 418  Q
     || ||||||||||| || |||||||  ||||||||||||||||||||||||| ||| |||||| ||| || ||||  |  ||| || |||||||||| |    
T  2856525 gctcgagatacacacgctcggaacatcatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggc 2856624  T
Q  419 acacttcattgg 430  Q
     |||||||||||    
T  2856625 gcacttcattgg 2856636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 430
Target Start/End: Complemental strand, 9004028 - 9003820
Alignment:
Q  220 tggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgatc 319  Q
    |||||||||||  ||| ||||||||||||| |||||||||||||||| ||||   || ||||||| | ||| |  |   |  | ||||||||||| ||||    
T  9004028 tggttttggttatcaacctaaaactaatgattataaggtgataaaaatatggacgagacatgttagaggtgacaataactttgtgtttgagcgtgcgatc 9003929  T
Q  320 cttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgaca 419  Q
    |||||||||||||||   ||||||   ||||||||||||||||||||||||| |||  | ||||||| ||| ||| | | ||| ||||||||||||| |     
T  9003928 cttgagatacacactg--ggaacaccatcatggagaaatgttgaagtggatcctcaactgtctatttggagtcttaattatccgacttgtgtgaatggcg 9003831  T
Q  420 cacttcattgg 430  Q
    |||||||||||    
T  9003830 cacttcattgg 9003820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 430
Target Start/End: Original strand, 2874035 - 2874246
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgat 318  Q
    |||||||| |||||||| | ||||||||||||||||||||||| | || ||||   |   |||||| ||| | |  ||||| || ||||||||||||  |    
T  2874035 ctggttttagtttccaacccaaaactaatgaatataaggtgatcataatatggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagt 2874134  T
Q  319 ccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgac 418  Q
     || ||||||||||| || ||||||   ||||||||||||||||||||||||| ||| |||||| ||| || ||||  |  ||| || |||||||||| |    
T  2874135 gctcgagatacacacgctcggaacaccatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggc 2874234  T
Q  419 acacttcattgg 430  Q
     |||||||||||    
T  2874235 gcacttcattgg 2874246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 430
Target Start/End: Original strand, 2844598 - 2844809
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgat 318  Q
    ||||||||||||||||| | ||||||||||||||||||||||| | ||  |||   |   |||||| |||   |  ||||| || ||||||||||||  |    
T  2844598 ctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgaaacaatcgtttggtgtttgagcgtgtagt 2844697  T
Q  319 ccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgac 418  Q
     || ||||||||||| |||||||||   ||||||||||| ||||||||||||| ||| |||||| ||| || ||||  |  ||| || |||||||||| |    
T  2844698 gctcgagatacacacgcttggaacaccatcatggagaaaggttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggc 2844797  T
Q  419 acacttcattgg 430  Q
     |||||||||||    
T  2844798 gcacttcattgg 2844809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 430
Target Start/End: Original strand, 9074356 - 9074475
Alignment:
Q  311 cgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtg 410  Q
    |||||||||||| ||||| |||| |||||||||     || |||||||||||||||||||| ||| |||||| ||| ||| || |||| ||| |||||||    
T  9074356 cgtgtgatccttcagataaacacacttggaacaacaatattgagaaatgttgaagtggatcctcaaatttcttttttgagtctcgagtatcccacttgtg 9074455  T
Q  411 tgaatgacacacttcattgg 430  Q
    ||||||   |||||||||||    
T  9074456 tgaatggtgcacttcattgg 9074475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 2904541 - 2904585
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataa 263  Q
    ||||||||||||||||| | |||||||||||||||||||||||||    
T  2904541 ctggttttggtttccaacccaaaactaatgaatataaggtgataa 2904585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 9074277 - 9074349
Alignment:
Q  220 tggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgcc 292  Q
    ||||||||| |||||| |||| ||||||||||||||||| |||| ||  ||| |||| |||| ||||||||||    
T  9074277 tggttttggattccaacctaatactaatgaatataaggtaataagaatgtggataagacatggtaaacgtgcc 9074349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 8644687 - 8644620
Alignment:
Q  318 tccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatt 385  Q
    ||||||||||| |||| |||||||||   ||||||||||||| |||||| |||| ||| |||||||||    
T  8644687 tccttgagataaacacacttggaacaccatcatggagaaatgctgaagtagatcctcaaatttctatt 8644620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 8678305 - 8678222
Alignment:
Q  303 agtttgagcgtgtgatccttgagatacacactcttggaa-cattgtcatggagaaatgttgaagtggatcttcagatttctatt 385  Q
    ||||||| ||| |||||||||||||| ||||  |||||| ||   ||||||||||||| ||||||||||| ||| |||||||||    
T  8678305 agtttgatcgtatgatccttgagataaacacaattggaaacaccatcatggagaaatgctgaagtggatcctcaaatttctatt 8678222  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 2904642 - 2904704
Alignment:
Q  320 cttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttct 382  Q
    |||||||||||||| || ||||||   |||||||||||| |||||||||||| ||| ||||||    
T  2904642 cttgagatacacacgctcggaacaacatcatggagaaatcttgaagtggatcctcaaatttct 2904704  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 8644782 - 8644744
Alignment:
Q  223 ttttggtttccaatctaaaactaatgaatataaggtgat 261  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  8644782 ttttggcttccaacctaaaactaatgaatataaggtgat 8644744  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 11354043 - 11354081
Alignment:
Q  225 ttggtttccaatctaaaactaatgaatataaggtgataa 263  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  11354043 ttggcttccaacctaaaactaatgaatataaggtgataa 11354081  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 11373350 - 11373312
Alignment:
Q  225 ttggtttccaatctaaaactaatgaatataaggtgataa 263  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  11373350 ttggcttccaacctaaaactaatgaatataaggtgataa 11373312  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 8637721 - 8637669
Alignment:
Q  24 gagaataaatccaaacgccctcatcgggctgtgagattagctttggagaaaaa 76  Q
    ||||||||| |||| ||||||  ||| |||| |||||||||||||||||||||    
T  8637721 gagaataaacccaagcgccctattcgtgctgcgagattagctttggagaaaaa 8637669  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 8678384 - 8678348
Alignment:
Q  227 ggtttccaatctaaaactaatgaatataaggtgataa 263  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  8678384 ggtttccaacctaaaactaatgaatacaaggtgataa 8678348  T

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Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 219 - 430
Target Start/End: Complemental strand, 9443666 - 9443455
Alignment:
Q  219 ctggttttggtttccaatctaaaactaatgaatataaggtgataaaaacatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgat 318  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||     ||| |||| ||||||||||  |||  ||  |||| |||||||||||||||    
T  9443666 ctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacaagccaatcagtgggtgtttgagcgtgtgat 9443567  T
Q  319 ccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtgaatgac 418  Q
    |||||||||| |||| |||||||||   || |||||||||||||||||||||| ||| |||||| ||||||| ||  ||| ||| |||||||||||||      
T  9443566 ccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggt 9443467  T
Q  419 acacttcattgg 430  Q
     |||||||||||    
T  9443466 gcacttcattgg 9443455  T

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