View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_high_8 (Length: 430)
Name: NF20369_high_8
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 45515329 - 45515594
Alignment:
| Q |
1 |
catactagttaatatgaaaaagaaactcaaaccagcagcttttatgaatattttgaacataaaaaagttgataaaaataccttcataacatcaacttcat |
100 |
Q |
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| T |
45515329 |
catactagttaatatgaaaaagaaactcaaaccagcagcttttatgaatattttgaacataaaaaagttgataaaaataccttcataacatcaacttcat |
45515428 |
T |
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| Q |
101 |
aagatcctgatctaatggctcgaaagatcctctctccagcatacaataaaactggaaaagcaatgtacatccatgtctgcatgtagtaagataaatatat |
200 |
Q |
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| T |
45515429 |
aagatcctgatctaatggctcgaaagatcctctctccagcatacaataaaactggaaaagcaatgtacatccatgtctgcatgtagtaagataaatatat |
45515528 |
T |
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| Q |
201 |
aggaaatgaaaatctacacaaaaattagtgctactttcaagagttttagtaacatttactgctgtc |
266 |
Q |
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| T |
45515529 |
aggaaatgaaaatctacacaaaaattagtgctactttcaagagttttagtaacatttactgctgtc |
45515594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 265 - 414
Target Start/End: Original strand, 45515625 - 45515774
Alignment:
| Q |
265 |
tcatgcagtagactagtgatgagaaattgagaactttaattaatttagtaaacatgattcaacaaatgaaaaatgttgcatatacttcaatattcatttg |
364 |
Q |
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| T |
45515625 |
tcatgcagtagactagtgacgagaaattgagaactttaattaatttagtaaacatgattcaacaaatgaaaaatgttgcatatacttcaatattcatttg |
45515724 |
T |
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| Q |
365 |
ctaaattggatgtcttataaaacactaagcttgaataattcagttctttt |
414 |
Q |
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| T |
45515725 |
ctaaattggatgtcttataaaacactaagcttgaataattcagttctttt |
45515774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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