View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_10 (Length: 431)
Name: NF20369_low_10
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 35720194 - 35719795
Alignment:
| Q |
19 |
tggccatgcagctcaatttatggacctgaattccttgaagtaaattattataataatacagaagagagcaaatgacggtggcttctgttatttgctaagg |
118 |
Q |
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| T |
35720194 |
tggccatgcagctcaatttatggacctgaattccttgaagtaaattattataataatacagaagagagcaaatgacggtggcttctgttatttgctaagg |
35720095 |
T |
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| Q |
119 |
cctacgagtgagatggggtttataatgtgctaagaagctgaatcaatttcagggaattcttgggacaatttgagaggaccgcaataagagtcttttgaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35720094 |
cctacgagtgagatggggtttataatgtgctaagaagctgaatcaatttcagggaattcttgggacaatttgagaggaccacaataagagtcttttgaat |
35719995 |
T |
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| Q |
219 |
actgaatcccacaatctagtaggggtagcaaaaacaatagggtctaaagttgtgtaatgcattaaataaaatttcgtgaccaatgaattggtttctttac |
318 |
Q |
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| T |
35719994 |
actgaatcccacaatctagtaggggtagcaaaaacaatagggtctaaagttgtgtaatgcattaaataaaatttcgtgaccaatgaattggtttctttac |
35719895 |
T |
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| Q |
319 |
gtgtatctgttgtaatatatttgtggttttcaattaaaagtttgttatattattttagttgctaaactctctttattgctacatgctttttaccttgatg |
418 |
Q |
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| T |
35719894 |
gtgtatctgttgtaatatatttgtggttttcaattaaaagtttgttatattattttagttgctaaactctctttattgctacatgctttttaccttgatg |
35719795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 311 - 418
Target Start/End: Original strand, 50591879 - 50591986
Alignment:
| Q |
311 |
ttctttacgtgtatctgttgtaatatatttgtggttttcaattaaaagtttgttatattattttagttgctaaactctctttattgctacatgcttttta |
410 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
50591879 |
ttctttatgtgtattagttgtaatatatttgtggttttcaattaaaagtttgctatattatcttagttgctaaactctctttgttgctacacccttttta |
50591978 |
T |
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| Q |
411 |
ccttgatg |
418 |
Q |
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|||||||| |
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| T |
50591979 |
ccttgatg |
50591986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 41109057 - 41109152
Alignment:
| Q |
168 |
cagggaattcttgggacaatttgagaggaccgcaataagagtcttttgaatactgaatcccacaatctagtaggggtagcaaaaacaatagggtct |
263 |
Q |
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| T |
41109057 |
cagggaactcttgggacaatttgggaggaccacattaagaggcttttgcatactgaagcacataatctagtgggggtagaaaaatgaatagggtct |
41109152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 36413118 - 36413056
Alignment:
| Q |
326 |
tgttgtaatatatttgtggttttcaattaaaagtttgttatattattttagttgctaaactct |
388 |
Q |
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|||||| ||||||||||| |||||||||||||||||| |||||||| |||||| |||||||| |
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| T |
36413118 |
tgttgtgatatatttgtgattttcaattaaaagtttgctatattatactagttgttaaactct |
36413056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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