View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_14 (Length: 294)
Name: NF20369_low_14
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_14 |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 22764315 - 22764471
Alignment:
| Q |
1 |
acactaatgtttgttaatccagttcggctcaatatgacctacatctgggggagacagtagctctccaatatccactataaaacgagtgatacaaggagtt |
100 |
Q |
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| T |
22764315 |
acactaatgtttgttaacccagttcggctcaatataacctacatctaggggagacagtagttctccaat--ccactataaaacgagtgatacaaggaggt |
22764412 |
T |
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| Q |
101 |
tacaagaaattagatccaagagttttcaaagaacttatccctaatttcttttcatttatc |
160 |
Q |
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| T |
22764413 |
tacaagaaattagatcaaagagttttcaaagatc-tatccctaatttcttttcatttatc |
22764471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 33386749 - 33386692
Alignment:
| Q |
11 |
ttgttaatccagttcggctcaatatgacctacatctgggggagacagtagctctccaat |
69 |
Q |
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| T |
33386749 |
ttgttgatccagttcggtccaatatgaccta-atctgggggagagagcagctctccaat |
33386692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 33079680 - 33079875
Alignment:
| Q |
6 |
aatgtttgttaatccagttcggctcaatatgacctacatctggggg-agacagtagctctccaatatccactataaaacgagtgatacaaggagtttaca |
104 |
Q |
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| T |
33079680 |
aatgcttgttaacccagttcgacccaatatgacctacatctggggggagagatcagctctccaat--ccactatgaaattagtgatacaaggaggttaca |
33079777 |
T |
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| Q |
105 |
agaaattagatccaagagttttcaaagaacttatccctaatttcttttcatttatcaagtcactcagcctacaatgagatcctaagataaattaagaga |
203 |
Q |
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| T |
33079778 |
agaaattagatccaagagctttcgaaaaac-tatccctaatttctacccatatatcaagtcactcagcccacaatgaaatctcaagagaaaataagaga |
33079875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 28388044 - 28388090
Alignment:
| Q |
70 |
atccactataaaacgagtgatacaaggagtttacaagaaattagatc |
116 |
Q |
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| T |
28388044 |
atccactataaaatgattgatacaaagaggttacaagaaattagatc |
28388090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9765922 - 9765855
Alignment:
| Q |
1 |
acactaatgtttgttaatccagttcggctcaatatgacctacatctgggggagacagtagctctccaat |
69 |
Q |
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| T |
9765922 |
acaccaatgattgttgacccagttcggtccaatatgaccta-atctgggggagagagcagctctccaat |
9765855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 10445537 - 10445480
Alignment:
| Q |
11 |
ttgttaatccagttcggctcaatatgacctacatctgggggagacagtagctctccaat |
69 |
Q |
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| T |
10445537 |
ttgttgatccagttcggtccaatatgaccta-atctgggggagagagcagctctccaat |
10445480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 45266 - 45314
Alignment:
| Q |
20 |
cagttcggctcaatatgacctacatctgggggagacagtagctctccaat |
69 |
Q |
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| T |
45266 |
cagttcggttcaatatgaccta-atctgggggagagagcagctctccaat |
45314 |
T |
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