View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_17 (Length: 282)
Name: NF20369_low_17
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_17 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 45177906 - 45177844
Alignment:
| Q |
220 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctc |
282 |
Q |
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| T |
45177906 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctc |
45177844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 45178176 - 45178074
Alignment:
| Q |
27 |
tatttttgagcgtaccgaaacgcattgatattattattat---------gaaacaaagatgaacagtcacggca-tttccttttccccctttgtttgtgt |
116 |
Q |
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| T |
45178176 |
tatttttgagcgtaccgaaacgcattgatattattattattattattatgaaacaaggatgaacagtcacggcattttccttttccccctttgtttgtgt |
45178077 |
T |
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| Q |
117 |
tga |
119 |
Q |
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||| |
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| T |
45178076 |
tga |
45178074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 45178046 - 45178009
Alignment:
| Q |
186 |
aacttgctaaaatgcacattttggtattggcaaaagca |
223 |
Q |
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| T |
45178046 |
aacttgctaaaatgcacattttggtattggcaaaagca |
45178009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 5904916 - 5904885
Alignment:
| Q |
128 |
aaagtgtgatttatttttataggaccaaaaat |
159 |
Q |
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| T |
5904916 |
aaagtgtgatttatttttataggaccaaaaat |
5904885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 19928034 - 19927993
Alignment:
| Q |
128 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaat |
168 |
Q |
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| T |
19928034 |
aaagtgtgatttatttttatagggaccaaaaacttaattaat |
19927993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 10895594 - 10895549
Alignment:
| Q |
128 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaatcctt |
172 |
Q |
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| T |
10895594 |
aaagtgtgatttatttttatagggaccaaaaacttaattaaccctt |
10895549 |
T |
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