View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_19 (Length: 265)
Name: NF20369_low_19
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 39034263 - 39034511
Alignment:
| Q |
1 |
taacaaaggtgtaaccacattttattttcatgaccaaattgtctctttatcactatttctccacatgattttagtcaatggaatatatttgaggcacact |
100 |
Q |
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| T |
39034263 |
taacaaaggtgtaaccacattttattttcatgaccaaattgtctctttatcactatttctccacacgattttagtgaatggaatatatttgaggcacact |
39034362 |
T |
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| Q |
101 |
tgtggtttttgagtcatgataaaaaagtgaggtgaatgatctttaatattttcaatgtttgacaagttttaggcatactggccaaaaaggagttgcactt |
200 |
Q |
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| T |
39034363 |
tgtggtttttgagtcatgataataaagtgaggcgaatgatcttcaatattttcaatgtttgacaagttttaggcatactgaccaaaaaggagttgcactt |
39034462 |
T |
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| Q |
201 |
aaccggttttgaactaaggtttaatcatatttgacaagtttttcttcat |
249 |
Q |
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| T |
39034463 |
aaccggttttgaactaaggtttaaccatatttgacaagtttttcttcat |
39034511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 34165056 - 34165196
Alignment:
| Q |
1 |
taacaaaggtgtaaccacattttattttcatgaccaaattgtctctttatcactatttctccacatgattttagtcaatggaatatatt--tgaggcaca |
98 |
Q |
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| T |
34165056 |
taacaaaggtgtaaccacattttagttttatgacc-aattgtctctttctcaccatttctccatgtgattatattaaaaggaatgtttttatgggacacg |
34165154 |
T |
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| Q |
99 |
cttgtggtttttgagtcatgataaaaaagtgaggtgaatgat |
140 |
Q |
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| T |
34165155 |
cttgtgattttttagtgatgataataaagtgaggtgaatgat |
34165196 |
T |
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