View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20369_low_21 (Length: 254)

Name: NF20369_low_21
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20369_low_21
NF20369_low_21
[»] chr4 (3 HSPs)
chr4 (1-238)||(15556436-15556673)
chr4 (1-71)||(35155836-35155906)
chr4 (3-84)||(35162858-35162939)
[»] chr3 (17 HSPs)
chr3 (2-101)||(46480221-46480320)
chr3 (1-101)||(46506843-46506948)
chr3 (6-97)||(46498380-46498471)
chr3 (1-84)||(51944317-51944400)
chr3 (1-95)||(47413797-47413891)
chr3 (8-101)||(46474357-46474450)
chr3 (4-91)||(46236395-46236482)
chr3 (8-101)||(46484474-46484567)
chr3 (1-101)||(46491133-46491233)
chr3 (3-72)||(16025907-16025976)
chr3 (3-95)||(5156674-5156766)
chr3 (11-95)||(5160714-5160798)
chr3 (3-95)||(46532342-46532434)
chr3 (3-99)||(46535370-46535466)
chr3 (3-94)||(46553795-46553886)
chr3 (6-78)||(46526031-46526103)
chr3 (3-94)||(46544913-46545004)
[»] chr2 (4 HSPs)
chr2 (1-95)||(20168627-20168721)
chr2 (1-95)||(20359563-20359657)
chr2 (1-95)||(20145053-20145147)
chr2 (18-71)||(20251386-20251439)
[»] chr7 (6 HSPs)
chr7 (5-104)||(17699604-17699703)
chr7 (5-95)||(17718537-17718627)
chr7 (5-95)||(17736950-17737040)
chr7 (5-104)||(16722590-16722689)
chr7 (5-95)||(17708713-17708803)
chr7 (5-95)||(17736367-17736457)
[»] chr8 (2 HSPs)
chr8 (3-101)||(9692325-9692423)
chr8 (6-95)||(21463785-21463874)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15556436 - 15556673
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
15556436 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatccttttgctggg 15556535  T
101 taatcatgtttgagtgcctttgatctctgaaattactttttccatatcagtttgctagtgtaaaataacaaagcaattgtttcttcaatcttattatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15556536 taatcatgtttgagtgcctttgatctctgaaattactttttccatatcagtttgctagtgtaaaataacaaagcaattgtttcttcaatcttattatgat 15556635  T
201 gttttgttgtttcaacatgctgctttaggcgagcttag 238  Q
    ||||||||||||||||||||||||||||||||||||||    
15556636 gttttgttgtttcaacatgctgctttaggcgagcttag 15556673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 35155836 - 35155906
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttg 71  Q
    |||||||||| ||||||| ||||| ||||||||| |||| |||||||||||||||   |||||||||||||    
35155836 actagactttatagctgatcaccctttcttatttttaattagagaagatttgacccaaacaatcctctttg 35155906  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 35162858 - 35162939
Alignment:
3 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgct 84  Q
    |||||||| ||||||| || || |||||||||||||| |||||||||| ||||   |||||||||||||  ||||| |||||    
35162858 tagactttatagctgatcatcctttcttatttctaattagagaagattcgacccaaacaatcctctttgcgggacaagtgct 35162939  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 46480221 - 46480320
Alignment:
2 ctagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctgggt 101  Q
    ||||||||||||||||||||||| ||||||||| | || |||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
46480221 ctagactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggt 46480320  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 46506948 - 46506843
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctc-----tttgttggacaggtgcttaatcctcttg 95  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |||||||||     ||||||||||||||||| ||||||||||    
46506948 actagactttgtagctgaccacccattcttatttctaattaaagaagattggaccggaacaatcctctttaatttgttggacaggtgctcaatcctcttg 46506849  T
96 ctgggt 101  Q
    ||||||    
46506848 ctgggt 46506843  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 46498380 - 46498471
Alignment:
6 actttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgct 97  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||||||| || ||| |||||||||| |||||||| ||||||||||||    
46498380 actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttgct 46498471  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 51944317 - 51944400
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgct 84  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||||||||| || |||||| |||||||||||||||||||    
51944317 actagactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgct 51944400  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 47413891 - 47413797
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||||||||  ||||  |||||||||||||||||||| ||||| ||||||||||    
47413891 actagactttgtagccgaccaccctttcttatttctaattagagaagattcaaccgaaacaatcctctttgttggacatgtgctcaatcctcttg 47413797  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 46474357 - 46474450
Alignment:
8 tttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctgggt 101  Q
    ||||||| ||| ||||||||||||| |||||| ||||| |||||| |||| |||||| |||||||||||||||||||||||||||||| |||||    
46474357 tttgtagttgatcacccattcttatatctaattagagatgatttggccggaacaatcatctttgttggacaggtgcttaatcctcttgatgggt 46474450  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 46236482 - 46236395
Alignment:
4 agactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcct 91  Q
    ||||||||||||||| ||||| ||| |||||||||| ||||||| || |||||| ||||||||||||| |||||||||||| ||||||    
46236482 agactttgtagctgatcaccctttcctatttctaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcct 46236395  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 46484474 - 46484567
Alignment:
8 tttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctgggt 101  Q
    ||||||||||| ||||||||||||| |||||| ||||| |||||| | || |||||| ||||||||||||| |||||||||| ||||| |||||    
46484474 tttgtagctgatcacccattcttatatctaattagagatgatttggctggaacaatcatctttgttggacatgtgcttaatcatcttgatgggt 46484567  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 46491133 - 46491233
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctggg 100  Q
    |||||||||||| |||| |||||| ||||| ||| | || |||||||| ||||| || |||||| ||||||||||||||||| | |||||||||||||||    
46491133 actagactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctggg 46491232  T
101 t 101  Q
    |    
46491233 t 46491233  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 16025907 - 16025976
Alignment:
3 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgt 72  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||  ||||||||||||||    
16025907 tagattttgtagctgaccaccctttcttatttctaattagagaagatttaaccgaaacaatcctctttgt 16025976  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 5156674 - 5156766
Alignment:
3 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||||||||||||||| ||||| |||||||||||||| |||||| | | ||| || || || |||||||||||||| ||||| ||||| ||||    
5156674 tagactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttg 5156766  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 5160714 - 5160798
Alignment:
11 gtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||||||||||||| ||||||||||| || |||||||||| ||| || || || |||||||||||||| || || ||||||||||    
5160714 gtagctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatcctcttg 5160798  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 46532342 - 46532434
Alignment:
3 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||||||||||||||||||||| ||| | ||| | |||||||| |||||| | || ||||| ||||||||||| || ||||| ||||||||||    
46532342 tagactttgtagctgaccaccctttcatgtttttgataagagacgatttgtctggtacaatactctttgttggccaagtgctcaatcctcttg 46532434  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 46535370 - 46535466
Alignment:
3 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctgg 99  Q
    ||||||||||||||||||| || ||||| ||| | ||||||||||||||  | || ||||| | ||||||||| || |||| |||||||||||||||    
46535370 tagactttgtagctgaccatcctttcttgtttttgataagagaagatttatctggtacaatacactttgttgggcaagtgcataatcctcttgctgg 46535466  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 46553886 - 46553795
Alignment:
3 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctctt 94  Q
    |||||||||||||||||||||| ||||| ||| | || |||||||||||| | || ||||| ||||||||||| || || || |||||||||    
46553886 tagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctggtacaatactctttgttggccaagttctcaatcctctt 46553795  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 46526103 - 46526031
Alignment:
6 actttgtagctgaccacccattcttatttctaataagagaagatttgaccggcac-aatcctctttgttggaca 78  Q
    |||||||||| |||||||  ||||| |||||||| |||||||||||||| || || ||||||||||||||||||    
46526103 actttgtagcagaccacct-ttcttgtttctaattagagaagatttgactggaacaaatcctctttgttggaca 46526031  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 46544913 - 46545004
Alignment:
3 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctctt 94  Q
    |||||||||||||||||||||| ||||| ||| | || |||||||||||| | || ||  | |||||| ||||||| || || |||||||||    
46544913 tagactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctttattggacaagttctcaatcctctt 46545004  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 20168721 - 20168627
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||| |||||| || | ||||||| |||||||||||||| || ||||||||||| || |||||||||||||| || || ||||| ||||||||||    
20168721 actaaactttgaagttaaccaccccttcttatttctaattagggaagatttgacgggaacaatcctctttgtcgggcaagtgctcaatcctcttg 20168627  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 20359563 - 20359657
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||| |||||| || | ||||||| |||||||||||||| || ||||||||||| || |||||||||||||| || || ||||| ||||||||||    
20359563 actaaactttgaagttaaccaccccttcttatttctaattagggaagatttgacgggaacaatcctctttgtcgggcaagtgctcaatcctcttg 20359657  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 20145053 - 20145147
Alignment:
1 actagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||| |||||| || | ||||||| |||||||||||||| || ||||||||||| ||  ||||||||||||| || || ||||| ||||||||||    
20145053 actaaactttgaagttaaccaccccttcttatttctaattagggaagatttgacgggatcaatcctctttgtcgggcaagtgctcaatcctcttg 20145147  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 20251386 - 20251439
Alignment:
18 accacccattcttatttctaataagagaagatttgaccggcacaatcctctttg 71  Q
    ||||||| |||||||||||||| |||||||||||||| || |||||||||||||    
20251386 accaccccttcttatttctaattagagaagatttgacgggaacaatcctctttg 20251439  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 17699604 - 17699703
Alignment:
5 gactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctgggtaat 104  Q
    |||||||||||||||||||| || |||||||| || |||||||| || |  || || || |||||||||||| ||||| | |||||||||| ||| ||||    
17699604 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttaat 17699703  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 17718537 - 17718627
Alignment:
5 gactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||||||||||||||||||| || |||||||| || |||||||| || |  || || || |||||||||||| ||||| | ||||||||||    
17718537 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 17718627  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 17736950 - 17737040
Alignment:
5 gactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||||||||||||||||||| || |||||||| || |||||||| || |  || || || |||||||||||| ||||| | ||||||||||    
17736950 gactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 17737040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 16722590 - 16722689
Alignment:
5 gactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctgggtaat 104  Q
    |||||||| ||||||||||| || |||||||| || |||||||| || |  || || || |||||||||||| ||||| | |||||||||| ||| ||||    
16722590 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttaat 16722689  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 17708713 - 17708803
Alignment:
5 gactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||||||| ||||||||||| || |||||||| || |||||||| || |  || || || |||||||||||| ||||| | ||||||||||    
17708713 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 17708803  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 17736367 - 17736457
Alignment:
5 gactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||||||| ||||||||||| || |||||||| || |||||||| || |  || || || |||||||||||| ||||| | ||||||||||    
17736367 gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg 17736457  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 9692423 - 9692325
Alignment:
3 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttgctgggt 101  Q
    |||||||| |||| || ||||| ||| |||||||||| |||||||||||||||   || ||| ||||||  |||||||| || |||||||||| |||||    
9692423 tagactttatagccgatcaccctttcctatttctaattagagaagatttgacccaaacgatcatctttgccggacaggttctcaatcctcttgttgggt 9692325  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 21463874 - 21463785
Alignment:
6 actttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttggacaggtgcttaatcctcttg 95  Q
    |||| |||||||| ||||| ||||| ||| | || |||||||||||| |||| || || |||||| |||| || ||||| ||||||||||    
21463874 acttcgtagctgatcaccctttcttgtttttgatcagagaagatttgtccggaaccatactctttattgggcaagtgctcaatcctcttg 21463785  T

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