View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_26 (Length: 239)
Name: NF20369_low_26
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_26 |
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| [»] chr2 (16 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 39214730 - 39214960
Alignment:
| Q |
9 |
gagatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttaga |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39214730 |
gagatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaacccataaatcattttcctcgctgaagaaagaccttgctatgttaga |
39214829 |
T |
|
| Q |
109 |
taaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaagagagatattgggcattgcaagaggaagaggacagta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39214830 |
aaaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagatttcagtctctaaagagagatattgggcattgcaagaggaagaggaaagta |
39214929 |
T |
|
| Q |
209 |
gaggagaagagattgcagtccataaagagat |
239 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
39214930 |
gaggagaagagattgcagtccataaagagat |
39214960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 39601861 - 39602031
Alignment:
| Q |
11 |
gatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagata |
110 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||| ||||||| | |
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| T |
39601861 |
gatgaagatgatattcctttgttggatttaattaaaaggccaagcaaatcaactgataaatcattttcctcgctgaagaaaggccttgcattgttagaaa |
39601960 |
T |
|
| Q |
111 |
aattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaagagagatatt |
181 |
Q |
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| | |||| ||||| |||| | |||| | || |||| ||||| ||||||||||| |||||| ||||||| |
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| T |
39601961 |
actcatttcaggaaggcaataagaagacgaaattagaagagaatagattgcagtccataaagatagatatt |
39602031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 39450414 - 39450540
Alignment:
| Q |
56 |
aaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaaga |
155 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||| ||||||||| | ||||||| || |||| |
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| T |
39450414 |
aaattaactgataaatcattttcctcgctgaagaaagaccttacattgttagaaaaattatttgaggaatgtaaaaggaagcagaaagtagaagaaaaga |
39450513 |
T |
|
| Q |
156 |
gattgcagtctctaaagagagatattg |
182 |
Q |
| |
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|||||||||| | |||| |||||||| |
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| T |
39450514 |
gattgcagtccatcaagacagatattg |
39450540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 39220086 - 39220198
Alignment:
| Q |
65 |
gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt |
164 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| || ||||||||| | |||| || |||| ||||| |||| |
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| T |
39220086 |
gataaatcattttcctcgctgaagaaagaccttgcggtgttagaaaaattatttgaggagtgtaaaaggaagcagaaagttgaagagagaagattacagt |
39220185 |
T |
|
| Q |
165 |
ctctaaagagaga |
177 |
Q |
| |
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| |||||||||| |
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| T |
39220186 |
ccataaagagaga |
39220198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 39199630 - 39199516
Alignment:
| Q |
65 |
gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt |
164 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| | || |||| |||||||| ||||||||||||||||| | |||| || ||||| |||||||||| |
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| T |
39199630 |
gataaatcattttcctcgctgaagaaagagcttacgctgctagaagaattatttaaggaatgcaaaaggaagcagaaagttgaagagaaaagattgcagt |
39199531 |
T |
|
| Q |
165 |
ctctaaagagagata |
179 |
Q |
| |
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| |||||||||||| |
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|
| T |
39199530 |
ccataaagagagata |
39199516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 39151816 - 39151939
Alignment:
| Q |
59 |
tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat |
158 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| ||||| | | || |||| | |||| |||||||||||||| ||||||||| ||||||||| |
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|
| T |
39151816 |
tcaactgataaatcaatttccttgctgaagaaagagcttgcatttgtggaaaaatcaattgatgaatgcaaaaggaaaaggcaagtagaagagaagagac |
39151915 |
T |
|
| Q |
159 |
tgcagtctctaaagagagatattg |
182 |
Q |
| |
|
||||||| |||||||| |||||| |
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| T |
39151916 |
tgcagtcaataaagagaaatattg |
39151939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 39382358 - 39382247
Alignment:
| Q |
68 |
aaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctc |
167 |
Q |
| |
|
||||| ||||||| |||||||||||||||| | ||||||| ||||||||| |||||||||| ||||| | || |||| ||||||||||| ||||| |
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|
| T |
39382358 |
aaatcgttttcctcgctgaagaaagaccttacgctgttagaagaattatttgtggaatgcaaatggaagcagaaactagaagagaagagattacagtcca |
39382259 |
T |
|
| Q |
168 |
taaagagagata |
179 |
Q |
| |
|
|||||||||||| |
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|
| T |
39382258 |
taaagagagata |
39382247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 39458127 - 39458250
Alignment:
| Q |
59 |
tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat |
158 |
Q |
| |
|
||||| ||| ||||||||| || |||||||||||| || | || |||| |||| ||||||||| |||||||||| | |||||||| |||||||||| |
|
|
| T |
39458127 |
tcaactgatgaatcatttttctcgctgaagaaagaactcacattggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagat |
39458226 |
T |
|
| Q |
159 |
tgcagtctctaaagagagatattg |
182 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
39458227 |
tgcagtccataaagagagatattg |
39458250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 39488335 - 39488225
Alignment:
| Q |
68 |
aaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctc |
167 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || |||| | | ||||||||||||||||||||| ||||||||| ||| |||| |||||||| |
|
|
| T |
39488335 |
aaatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagaggggagactgcagtcta |
39488236 |
T |
|
| Q |
168 |
taaagagagat |
178 |
Q |
| |
|
||||||||||| |
|
|
| T |
39488235 |
taaagagagat |
39488225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 44614345 - 44614464
Alignment:
| Q |
10 |
agatgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagat |
109 |
Q |
| |
|
||||||||||||||||| || || | || ||| ||||||| ||||||||||| | |||| |||||||||| ||||| |||||| ||||| |||| | |
|
|
| T |
44614345 |
agatgaagatgatattccttcgttgaatataaataaaaggtcaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttaaaa |
44614444 |
T |
|
| Q |
110 |
aaattatttgaggaatgcaa |
129 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
44614445 |
aaatcatttgaggaatgcaa |
44614464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 39399170 - 39399044
Alignment:
| Q |
56 |
aaatcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaaga |
155 |
Q |
| |
|
|||||| | |||||||||||||| | ||| |||||||| || || |||| ||||| ||| || |||||||||||||| | ||||||| ||||||| |
|
|
| T |
39399170 |
aaatcagctgataaatcattttcatcgctcaagaaagaagttaaattggtagaaaaattgtttaagaaatgcaaaaggaagaggaaagtagaagagaaga |
39399071 |
T |
|
| Q |
156 |
gattgcagtctctaaagagagatattg |
182 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
39399070 |
gattgcagtccataaagagagatattg |
39399044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 39399101 - 39399051
Alignment:
| Q |
188 |
tgcaagaggaagaggacagtagaggagaagagattgcagtccataaagaga |
238 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
39399101 |
tgcaaaaggaagaggaaagtagaagagaagagattgcagtccataaagaga |
39399051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 39474431 - 39474308
Alignment:
| Q |
59 |
tcaaccgataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagat |
158 |
Q |
| |
|
||||| |||||||||||||||| || |||||||| ||||| | |||| |||| ||||||||| ||| |||||| | |||| |||| || |||||| |
|
|
| T |
39474431 |
tcaacggataaatcattttcctcactcaagaaagaacttgcatttgtagaaaaatcatttgaggattgccaaaggacgacgcaaatagaaaaggagagat |
39474332 |
T |
|
| Q |
159 |
tgcagtctctaaagagagatattg |
182 |
Q |
| |
|
|||| || ||||||||||||||| |
|
|
| T |
39474331 |
tgcattccataaagagagatattg |
39474308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 39416480 - 39416403
Alignment:
| Q |
105 |
tagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagtctctaaagagagatattg |
182 |
Q |
| |
|
|||| |||| |||||||||| ||| |||| | |||||||||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
39416480 |
tagaaaaatcatttgaggaacgcagaagggacatgcaagtagaaaagaagagattgcattccataaagagagatattg |
39416403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 39458210 - 39458243
Alignment:
| Q |
205 |
agtagaggagaagagattgcagtccataaagaga |
238 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
39458210 |
agtagaagagaagagattgcagtccataaagaga |
39458243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 39479331 - 39479278
Alignment:
| Q |
40 |
aattaaaaggccaggcaaatcaaccgataaatcattttccttgctgaagaaaga |
93 |
Q |
| |
|
|||||||||| | || ||||| || |||||||||||||||| |||||||||||| |
|
|
| T |
39479331 |
aattaaaaggtcgggaaaatcgactgataaatcattttcctcgctgaagaaaga |
39479278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 16112406 - 16112458
Alignment:
| Q |
186 |
attgcaagaggaagaggacagtagaggagaagagattgcagtccataaagaga |
238 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
16112406 |
attgcaaaaggaagaggacagaagaagagaagaaattgcagtccataaagaga |
16112458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 16112348 - 16112465
Alignment:
| Q |
65 |
gataaatcattttccttgctgaagaaagaccttgctatgttagataaattatttgaggaatgcaaaaggaaggtgcaagtagatgagaagagattgcagt |
164 |
Q |
| |
|
|||||||||||||||| ||||||||| || || | || |||| ||||| ||| || | |||||||||||| | || ||| ||||||| |||||||| |
|
|
| T |
16112348 |
gataaatcattttcctcgctgaagaatgaagttaatttggtagaaaaattgtttaagaattgcaaaaggaagaggacagaagaagagaagaaattgcagt |
16112447 |
T |
|
| Q |
165 |
ctctaaagagagatattg |
182 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
16112448 |
ccataaagagagatattg |
16112465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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