View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20369_low_30 (Length: 227)

Name: NF20369_low_30
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20369_low_30
NF20369_low_30
[»] chr6 (3 HSPs)
chr6 (116-213)||(21205635-21205733)
chr6 (19-86)||(21117529-21117597)
chr6 (120-196)||(21305699-21305776)
[»] scaffold1787 (1 HSPs)
scaffold1787 (113-197)||(1253-1338)
[»] chr5 (1 HSPs)
chr5 (25-81)||(21658993-21659051)


Alignment Details
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 21205635 - 21205733
Alignment:
Q  116 aaattcagcaataaaagagtgaaccttaatgtcaa-ggtatgcatcggaaatgggaagatggttattgttgcatttatgattggtaaaggttaagaact 213  Q
    |||| ||||||| |||  ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||    
T  21205635 aaatgcagcaatgaaatggtgaaccttaatgtcaaaggtatgcatcggaaaagggaagttggttattgttgcatttgtgattgataaaggttaagaact 21205733  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 21117529 - 21117597
Alignment:
Q  19 ggatccactcaaaaattaattattgaatcaagtacttttt-gggtacaaagtatacaaccaaatatatg 86  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  21117529 ggatccactcaaaaattaattattgaatctagtactttttggggtacaaagtatacaaccaaatatatg 21117597  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 21305699 - 21305776
Alignment:
Q  120 tcagcaataaaagagtgaaccttaatgtc-aaggtatgcatcggaaatgggaagatggttattgttgcatttatgatt 196  Q
    |||| |||||||| ||||||||||||||| ||||| |||||| ||||||||||| ||||  ||||||||||| |||||    
T  21305699 tcagaaataaaagggtgaaccttaatgtctaaggtgtgcatcagaaatgggaagttggtacttgttgcatttgtgatt 21305776  T

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Target: scaffold1787 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 1338 - 1253
Alignment:
Q  113 cacaaattcagcaataaaagagtgaaccttaatgtc-aaggtatgcatcggaaatgggaagatggttattgttgcatttatgattg 197  Q
    ||||||| | |||||||||| ||||||||||||||| ||| | |||||| ||||||||||| ||||||||||||||||| ||||||    
T  1338 cacaaatgcggcaataaaagggtgaaccttaatgtccaagctgtgcatcagaaatgggaagttggttattgttgcatttgtgattg 1253  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 21659051 - 21658993
Alignment:
Q  25 actcaaaaattaattattgaatcaagtact--ttttgggtacaaagtatacaaccaaat 81  Q
    |||||| |||||||||||||||||||||||  |||| |||||||||||||||| |||||    
T  21659051 actcaataattaattattgaatcaagtactttttttaggtacaaagtatacaatcaaat 21658993  T

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