View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_34 (Length: 216)
Name: NF20369_low_34
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 29544372 - 29544181
Alignment:
| Q |
11 |
gagaagaacaagaagttgcaaagaaggaattcatagatactctcaaattgttggaggatcagttaggagagagctcttattttggaggagacaaatttgg |
110 |
Q |
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| T |
29544372 |
gagaagaacaagaagttgcaaagaaggaattcatagatactctcaaattgttggaggatcagttaggagagagctcttattttggaggagacaaatttgg |
29544273 |
T |
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| Q |
111 |
ttttgtcgatatatcacttattccattctacagccgattaaaagtttatgagacctttggcaacctcaatttagagaatgagtgtcctaagt |
202 |
Q |
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| T |
29544272 |
ttttgtcgatatatcacttattccattctacagccgattaaaagtttatgagacctttggcaacctcaatttagagaatgagtgtcctaagt |
29544181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 29517123 - 29516932
Alignment:
| Q |
11 |
gagaagaacaagaagttgcaaagaaggaattcatagatactctcaaattgttggaggatcagttaggagagagctcttattttggaggagacaaatttgg |
110 |
Q |
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| T |
29517123 |
gagaagaacaagaagctgccaagaaggaattcatagaggctctcaaattgttggagcaagagctgggagacaagacttactttggaggagacaagattgg |
29517024 |
T |
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| Q |
111 |
ttttgtcgatatatcacttattccattctacagccgattaaaagtttatgagacctttggcaacctcaatttagagaatgagtgtcctaagt |
202 |
Q |
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| T |
29517023 |
ttttgtggatgtagcacttattccattctacacttggtttaaaggctatgagacctttggcaacatcaatgtagagaaggaatgccctaagt |
29516932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 29510235 - 29510044
Alignment:
| Q |
11 |
gagaagaacaagaagttgcaaagaaggaattcatagatactctcaaattgttggaggatcagttaggagagagctcttattttggaggagacaaatttgg |
110 |
Q |
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||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||| | || | ||||| | |||| |||||||||||||| |||| |
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| T |
29510235 |
gagaagaacaagaagctgccaagaaggaattcgtagaagctctcaaattgttggagcaagagctgggagacaagacttactttggaggagacaagattgg |
29510136 |
T |
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| Q |
111 |
ttttgtcgatatatcacttattccattctacagccgattaaaagtttatgagacctttggcaacctcaatttagagaatgagtgtcctaagt |
202 |
Q |
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| T |
29510135 |
ttttgtggatgtagcacttattccattctacacttggtttaaaggctatgagacctttggcaacatcaatgtagagaaggaatgccctaagt |
29510044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 29540737 - 29540605
Alignment:
| Q |
11 |
gagaagaacaagaagttgcaaagaaggaattcatagatactctcaaattgttggaggatcagttaggagagagctcttattttggaggagacaaatttgg |
110 |
Q |
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||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | ||| | ||||| | |||||||||||||||||| | |||| |
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| T |
29540737 |
gagaagaacaagaagcagccaagaaggaattcatagatatgctcaaattgttggagaaacagctgggagacaaggcttattttggaggagacagacttgg |
29540638 |
T |
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| Q |
111 |
ttttgtcgatatatcacttattccattctacag |
143 |
Q |
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||| || |||||| | || || ||||||||||| |
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| T |
29540637 |
tttggtagatatagccctaatcccattctacag |
29540605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 29534722 - 29534634
Alignment:
| Q |
86 |
cttattttggaggagacaaatttggttttgtcgatatatcacttattccattctacagccgattaaaagtttatgagacctttggcaac |
174 |
Q |
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| T |
29534722 |
cttattttggaggagataagcttggttttgtcgatgtagcacttattccatactacacttggtttaaaagttatgagacctttggcaac |
29534634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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