View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_35 (Length: 214)
Name: NF20369_low_35
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 214
Target Start/End: Original strand, 4116797 - 4116953
Alignment:
| Q |
56 |
ataatttccaattcattaactaaaaaacagaatgacctgtaaaatataaaatcgttttaaagnnnnnnnnngcaagagcacaaatgcaaaacaaatatat |
155 |
Q |
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| T |
4116797 |
ataatttccaattcattaactaaaaaacagaatgacctgtaaaatataaaatcgttttaaag--aaaaaaagcaagagcacaaatgcaaaacaaatatat |
4116894 |
T |
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| Q |
156 |
atgaaccactaaattaatatcaaactagaacatatagattgaataagaaaaatgccact |
214 |
Q |
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| T |
4116895 |
acgaacagctaaactaatatcaaaatggcacatatagattgaataagaaagatgccact |
4116953 |
T |
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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 21155851 - 21155952
Alignment:
| Q |
16 |
ataaatagttacccagagataatatactgtacacatgtgaataatttccaattcattaactaaaaaacagaatgacctgtaaaatataaaatcgttttaa |
115 |
Q |
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| T |
21155851 |
ataaatagttacccagagataatatattgtacacatgtgaataatttccaattcattaactaaaaaacagaatgacctgtaaaatataaaatcattttaa |
21155950 |
T |
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| Q |
116 |
ag |
117 |
Q |
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|| |
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| T |
21155951 |
ag |
21155952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 21156172 - 21156241
Alignment:
| Q |
145 |
aacaaatatatatgaaccactaaattaatatcaaactagaacatatagattgaataagaaaaatgccact |
214 |
Q |
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| T |
21156172 |
aacaaatatatatgaacagctaaactaatatcaaagtggcacatatagattgaataagaaagatgccact |
21156241 |
T |
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