View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_36 (Length: 207)
Name: NF20369_low_36
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 8405043 - 8404848
Alignment:
| Q |
1 |
aagcaagaaattctcaggcttaaggtccctatgcatgacccccataaaatgacaagcatgaaccacattcataatctgcttaaatatagaagcagcttca |
100 |
Q |
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| T |
8405043 |
aagcaagaaattctcaggcttaaggtccctatgcatgacccccataaaatgacaagcatgaaccacattcataatctgcttaaatatagaagcagcttca |
8404944 |
T |
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| Q |
101 |
cgctcagagtaactaccctttgcagtgatccgtgcagtgatccgatcgaaaagctcaccacctaaacacaactccatcaccaaatgcacactctct |
196 |
Q |
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| T |
8404943 |
cgctcagagtaactaccctttgcagtgatccgtgcagtgatccgatcgaaaagctcaccacctaaacacaactccatcaccaaatgcacactctct |
8404848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8403634 - 8403557
Alignment:
| Q |
1 |
aagcaagaaattctcaggcttaaggtccctatgcatgacccccataaaatgacaagcatgaaccacattcataatctg |
78 |
Q |
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| T |
8403634 |
aagcaagaaattctcaggcttaagatcacgatgcataacacccataaaatgacacacatgcaccacattcacaatctg |
8403557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 43465119 - 43465160
Alignment:
| Q |
149 |
aaaagctcaccacctaaacacaactccatcaccaaatgcaca |
190 |
Q |
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| T |
43465119 |
aaaagctcaccaccagcacacaactccatcaccaaatgcaca |
43465160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 18400073 - 18400033
Alignment:
| Q |
140 |
atccgatcgaaaagctcaccacctaaacacaactccatcac |
180 |
Q |
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| T |
18400073 |
atccgatcgaaaagctcaccacctgcacacaattccatcac |
18400033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 20501528 - 20501436
Alignment:
| Q |
4 |
caagaaattctcaggcttaaggtccctatgcatgacccccataaaatgacaagcatgaaccacattcataatctgcttaaatatagaagcagc |
96 |
Q |
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|||||||||||| || || || ||||||||||| || ||||||||||||||| || ||| ||||| | |||||| || | ||||||||||| |
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| T |
20501528 |
caagaaattctctggtttcagatccctatgcataactcccataaaatgacaaatattaacaacattaacaatctgtctacaaatagaagcagc |
20501436 |
T |
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