View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20369_low_37 (Length: 203)
Name: NF20369_low_37
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 6211922 - 6211753
Alignment:
| Q |
15 |
gagaagtgaaagaccaagtatacgttttacctcaacattgacaaaactcaagaatggaagaaccaaaatgacagataaaagtaattattaatttcagcag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6211922 |
gagaagtgaaagaccaagtatacgttttgcctcaacattgacaaaactcaagaatggaagaaccaaaatgacagataaaagtaattattaatttcagcag |
6211823 |
T |
|
| Q |
115 |
ttgacttactatgattgttacattattaacatgcttatgccatataggtttccatattatcaatccattg |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6211822 |
ttgacttactatgattgttacattattaacatgcttatgccatataggtttccatattatcaatccattg |
6211753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University