View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_5 (Length: 568)
Name: NF20369_low_5
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 12 - 552
Target Start/End: Complemental strand, 46848488 - 46847951
Alignment:
| Q |
12 |
agaatatagcaataagggtgcatcnnnnnnntccaatgattcatggccaattataatcaagcttacaacggattgtatgtgttgggatagcctcaaaatc |
111 |
Q |
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| T |
46848488 |
agaatgtagcaataagggtgcatcaaaaaaatccaatgattcatggccaattataatcaagcttgcaacggattgtatgtgttgggatagcctcaaaatc |
46848389 |
T |
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| Q |
112 |
tcaccttctaaggattttgaagaatatgttcttgaatatatgaatgaaagtagtcgtaaagctttggaatcatggattccactgaacatattaatttatg |
211 |
Q |
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| T |
46848388 |
tcaccttctaaggattttgaagaatatgttcttgaatatatgaatgaaagtagtcgtaaagctttggaatcatggattccactgaacatattaatttatg |
46848289 |
T |
|
| Q |
212 |
atgttgatacttgtgaaacttatgattcaaatttgttcaaaaaagagtcattttggtttgatcctatgcctcttgtgggtgaaaagacaaaagttggtaa |
311 |
Q |
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| T |
46848288 |
atgttgatacttgtgaaacttatgattcaaatttgtccaaaaaagagtcattttggtttgatcctatgcctcttgtgggtgaaaagacaaaagttggtaa |
46848189 |
T |
|
| Q |
312 |
acactctttttcttattcatcttcttcttatgaagaaacaatgtgggagctaccttgttatgatttggagaaggcaagaaaagagtttgtttattctatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46848188 |
acactctttttcttattcatcttcttcttatgaagaaacaatgtgggagctaccttgttatgatttggagaaggcaagaaaagagtttttttattctatt |
46848089 |
T |
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| Q |
412 |
gaaccatttagacacatcataaggaaaagagatctaaaatatgatcaacaaattggacttcgtttttgtggtggcaacgtgacagtaggatttgagtttt |
511 |
Q |
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| T |
46848088 |
gaaccatttagacacatcataaggaaaagagatctaaaatatgatcaacaaattggacttcgtttttgtggtggcaacgtgacagtaggatttgagtttt |
46847989 |
T |
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| Q |
512 |
ctgttctgcattcttcttcttcaattgtggatgttaattgt |
552 |
Q |
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| T |
46847988 |
ctgttctgcattctt---cttcaattgtggatgttaattgt |
46847951 |
T |
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