View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20369_low_6 (Length: 523)
Name: NF20369_low_6
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20369_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 509
Target Start/End: Original strand, 39581347 - 39581851
Alignment:
| Q |
7 |
ggagcagagaagggggagaccaatgaagaagacttgcataagaagaaaact--atctgtggactgtgattaagttgtccgctttgaattttctttttcct |
104 |
Q |
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| T |
39581347 |
ggagaagagaagggggggaccaatgaagaagacttgcataagaagaagactctatctgtggactgtgattaagttgtccgctttgaattttctttttcct |
39581446 |
T |
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| Q |
105 |
tatttgtttctcttcatannnnnnnaatgaatatttagaatttgatttatccactattggagctatttgagacatgaaaaatggaagttccctgtacgtt |
204 |
Q |
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| T |
39581447 |
tatttgtttctcttcatatttttttaatgaatatttagaatttgatttatccactattggagctatttgagacatgaaaaatggaagttccctgtacgtt |
39581546 |
T |
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| Q |
205 |
aaaacatgattggttggtttggattttcgacgcacttattataataatttatttatttattcaaatgctgtggaggatgaattaagaagctgataataat |
304 |
Q |
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| T |
39581547 |
aaaacatgattggttggtttggattttcgacgcacttattataataatttatttatttattcaaatgctgtggaggatgaattaagaagctgataataat |
39581646 |
T |
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| Q |
305 |
gcagccaaaatgaaaaggcaccaaagtctaaatatctctttccagggccatggaaattcatgaggtccaaattggtagtatgatttgtcgcgacgttctt |
404 |
Q |
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| T |
39581647 |
gcagccaaaatgaaaaggcaccaaagtctaaatatctctttccagggccatggaaattcatgaggtccaaattggtagtatgatttgtcgcgacgttctt |
39581746 |
T |
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| Q |
405 |
ataatggaaattgatcagaaatttgtggttccaatagacaatatatgtttttaggtaatataattaatttatatataacacgttcagtatcagtaacgtt |
504 |
Q |
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| T |
39581747 |
ataatggaaattgatcagaaatttgtggttccaatagacaatatatgtttttaggtaatataattaatttatatataacacgttcagtatcagtaacgtt |
39581846 |
T |
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| Q |
505 |
gatat |
509 |
Q |
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| T |
39581847 |
gatat |
39581851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 199 - 431
Target Start/End: Original strand, 39576983 - 39577217
Alignment:
| Q |
199 |
tacgttaaaacatgattggttggtttggattttcgacgcacttattataataatttatttatttattca----aatgctgtggaggatgaattaagaagc |
294 |
Q |
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| T |
39576983 |
tacgttaagacgtgattggttagttaggattttagatacatttattataataatttatttatttgttcaattcaatgctgcggagaatgaattaagaagc |
39577082 |
T |
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| Q |
295 |
tgataataatgcagccaaaatgaaaaggcaccaaagtctaaatatctctttccagggccatggaaa--ttcatgaggtccaaattggtagtatgatttgt |
392 |
Q |
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| T |
39577083 |
agctaataatgca-acaaaatggaaaggcactagagtctaagtaac-ccttggaggg-catgaaaattttcatgaggtccaaactggtagtatgacttgt |
39577179 |
T |
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| Q |
393 |
cgcgacgttcttataatggaaattgatcagaaatttgtg |
431 |
Q |
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| T |
39577180 |
tccgacgttcttgtaatgg-aatagatcagaaatttgtg |
39577217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 39571750 - 39571871
Alignment:
| Q |
146 |
ttgatttatccactattggagct--atttgagacatgaaaaatggaagttccctgtacgttaaaacatgattggttggtttggattttcgacgcacttat |
243 |
Q |
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| T |
39571750 |
ttgatttatcaactactggaactttatttgagacatgaaaaatgaaagttccctgtacgttcaaatgtgattggttagttttggttttagacgcacttaa |
39571849 |
T |
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| Q |
244 |
tataataatttatttatttatt |
265 |
Q |
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| T |
39571850 |
tataataatttgtttatttatt |
39571871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 39582170 - 39582290
Alignment:
| Q |
134 |
aatatttagaatttgatttatccactattggagctatttgagacatgaaaaatggaagttccctgtacgttaaaacatgattggttggtttggattttcg |
233 |
Q |
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| T |
39582170 |
aatatttgaaatttgatttaacaactactggaaccattagagacctgaaaaatgaaaaatccctgt----taaaacgtgattggttggtttggattatag |
39582265 |
T |
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| Q |
234 |
acgcacttattataataatttattt |
258 |
Q |
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| T |
39582266 |
atgcacttaatataataatttattt |
39582290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 39513124 - 39513182
Alignment:
| Q |
257 |
ttatttattcaaatgctgtggaggatgaattaagaagctgataataatgcagccaaaat |
315 |
Q |
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| T |
39513124 |
ttatttatttaaatgctgctgaaaatgaattaagaggctgctaataatgcagccaaaat |
39513182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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