View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20369_low_8 (Length: 464)

Name: NF20369_low_8
Description: NF20369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20369_low_8
NF20369_low_8
[»] chr5 (15 HSPs)
chr5 (1-222)||(1758560-1758781)
chr5 (291-447)||(1758778-1758934)
chr5 (1-189)||(29567858-29568052)
chr5 (229-359)||(29250127-29250257)
chr5 (1-189)||(29425719-29425916)
chr5 (1-189)||(27919065-27919259)
chr5 (355-447)||(29250415-29250507)
chr5 (101-189)||(29168727-29168815)
chr5 (388-447)||(38866987-38867046)
chr5 (388-447)||(29426336-29426395)
chr5 (186-253)||(29567215-29567281)
chr5 (1-67)||(29168672-29168738)
chr5 (383-441)||(29566638-29566696)
chr5 (383-441)||(29169362-29169420)
chr5 (383-447)||(32432111-32432175)
[»] chr4 (13 HSPs)
chr4 (186-359)||(27520380-27520553)
chr4 (186-359)||(18987200-18987369)
chr4 (1-189)||(18986493-18986687)
chr4 (1-189)||(27520829-27521023)
chr4 (1-189)||(27482552-27482740)
chr4 (356-447)||(27463021-27463112)
chr4 (359-447)||(27483396-27483484)
chr4 (353-447)||(18987740-18987834)
chr4 (359-447)||(27471623-27471711)
chr4 (355-447)||(27519912-27520004)
chr4 (40-183)||(27462505-27462660)
chr4 (186-265)||(27471494-27471573)
chr4 (1-104)||(27462412-27462512)
[»] chr3 (2 HSPs)
chr3 (1-189)||(25518897-25519091)
chr3 (388-447)||(25520054-25520113)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1758560 - 1758781
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 100  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||  || || ||     
T  1758560 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaacaagaagaagagccctctcctgatgctgaagatgaaaaagaacaagaacaag 1758659  T
Q  101 aagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggttt 200  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758660 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggttt 1758759  T
Q  201 ttaatttacagaatctatgtaa 222  Q
     |||||||||||||||||||||    
T  1758760 ataatttacagaatctatgtaa 1758781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 291 - 447
Target Start/End: Original strand, 1758778 - 1758934
Alignment:
Q  291 gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattgatt 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1758778 gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattcatt 1758877  T
Q  391 tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758878 tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 1758934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 29568052 - 29567858
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568052 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 29567953  T
Q  101 ------aagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 189  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||| ||||||||    
T  29567952 aagaacaagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgactgtctttt 29567858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 229 - 359
Target Start/End: Original strand, 29250127 - 29250257
Alignment:
Q  229 atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattgaagggtaaaaatgctaaattttaagacaagaacatactgaag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||    
T  29250127 atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattaaagggtaagattgctaaattttaagacaggaacatactgaag 29250226  T
Q  329 aatgaagatgacatattcaattatagtttca 359  Q
    |||||||||||||||||||||||||||||||    
T  29250227 aatgaagatgacatattcaattatagtttca 29250257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 29425719 - 29425916
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 100  Q
    |||||||||||||||||| || |||||||||||||||  |||||    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29425719 tgggatgaagttatggaaaacgaggaagaaaatgaaaaagaacac---caagaagaagagccctctcctgatgctgaagatgaaaaagatgaaaaagaac 29425815  T
Q  101 ------------aagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt 188  Q
                |||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  29425816 aagaacgagaagaagaacactctcttgactcttttgttgctgatgatgaaaaagtcatatctcaggtacatgtcttgaatattcagctgtgattgtcttt 29425915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 27919065 - 27919259
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 100  Q
    ||||||||||||||||||||| |||||||||||||||      ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||    
T  27919065 tgggatgaagttatggaagacgaggaagaaaatgaaa------aagaacaagaacaagagccctctcctgatgccgaagatgaaaaagatgaaaaagaac 27919158  T
Q  101 aagagca------------ctctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtcttt 188  Q
    |||| ||            ||||| ||||||| || || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||    
T  27919159 aagaacaagaacaagaacactctcttgactcttttattactgaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcgactgtgattgacttt 27919258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 355 - 447
Target Start/End: Original strand, 29250415 - 29250507
Alignment:
Q  355 tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  29250415 tttcagattaattgtttttatgctgaacaattcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtg 29250507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 29168727 - 29168815
Alignment:
Q  101 aagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 189  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  29168727 aagagcactctcttgactctcttgttgctgaagatgaaaatgtcatatctcaggtatatgtcttgaatcttcgactgtgattgtctttt 29168815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 38867046 - 38866987
Alignment:
Q  388 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38867046 atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 38866987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 447
Target Start/End: Original strand, 29426336 - 29426395
Alignment:
Q  388 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  29426336 atttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtg 29426395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 29567281 - 29567215
Alignment:
Q  186 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgt 253  Q
    |||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  29567281 tttttccttttgttttta-tttaccggatctaggtaagaataaatactcttcctttcaagaattttgt 29567215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29168672 - 29168738
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctc 67  Q
    ||||||||||| ||||||||| |||||||||||||||  |||||||||||||| ||||||| |||||    
T  29168672 tgggatgaagtcatggaagacgaggaagaaaatgaaaaagaacaagaacaagatgaagagcactctc 29168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 441
Target Start/End: Complemental strand, 29566696 - 29566638
Alignment:
Q  383 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgt 441  Q
    |||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  29566696 aattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgt 29566638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 29169362 - 29169420
Alignment:
Q  383 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgt 441  Q
    |||| |||| || |||||||||||||||||| ||||||||||||||||||||| |||||    
T  29169362 aattcatttatgattttgtaggatgaattgggaaatgattatgaagaagctgtcagtgt 29169420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 447
Target Start/End: Original strand, 32432111 - 32432175
Alignment:
Q  383 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    |||| |||||||| |||||||||||  |||| | | ||||||||||||||||||||||| |||||    
T  32432111 aattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtg 32432175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 186 - 359
Target Start/End: Complemental strand, 27520553 - 27520380
Alignment:
Q  186 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt 285  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |  ||||     
T  27520553 tttttcctttggtttttaatttaccgaatctaggtaagaataaacactcttcttttcaagaattttgtgggcaatatgttagagttagaggttttatatc 27520454  T
Q  286 gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca 359  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27520453 gaagggtaaaaatgctaaattttaagacaggaacatactgaagaatgaagatgacatattcaattatagtttca 27520380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 186 - 359
Target Start/End: Original strand, 18987200 - 18987369
Alignment:
Q  186 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt 285  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  18987200 tttttcctttggtttttaatttaccgaatctaggtaagaataaatactcttcctttcaagaattttgtgggaagtatgttagagttagaggctgcatatt 18987299  T
Q  286 gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca 359  Q
    ||||||||||||||||||||||||||||||||||||||||||    |||||||| |||||||||||||||||||    
T  18987300 gaagggtaaaaatgctaaattttaagacaagaacatactgaa----gaagatgatatattcaattatagtttca 18987369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 18986493 - 18986687
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 100  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18986493 tgggatgaagttatggaagacgaggaagaaaatgaaaaggaacaa---caagaagaagagccctctcctgatgctgaagatgaaaaagatgaaaaagaac 18986589  T
Q  101 ---------aagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 189  Q
             ||||||||| || ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18986590 aagaacaagaagagcactgtcttgactcttttgttgctaaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcaactgtgattgtctttt 18986687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 27521023 - 27520829
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 100  Q
    ||||||||||||||||||| | |||||||||||||||  ||||||   ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  27521023 tgggatgaagttatggaagtcgaggaagaaaatgaaaaagaacaa---caagaagaagagccctctcctgatgctgaagatgaaaaggatgaaaaagaac 27520927  T
Q  101 aaga---------gcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 189  Q
    ||||         |||||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27520926 aagaacaagaagagcactctcttgactcttttgttgctgaagatgaaaaagtcatatcgcaggtacatgtcttgaatcttcaactgtgattgtctttt 27520829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 27482552 - 27482740
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaag---atgaaaaag 97  Q
    ||||||||||||||||||| | |||||||||||||||      |||| ||||||||||||||||||||||||| ||||||||||||||   | ||| |||    
T  27482552 tgggatgaagttatggaagtcgaggaagaaaatgaaa------aagaccaagaagaagagccctctcctgatgctgaagatgaaaaagaacaagaacaag 27482645  T
Q  98 aac---aagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 189  Q
    |||   |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||| ||||    
T  27482646 aacaagaagagcactctcttgactcttttgttgctgaagatgaaaaagtcatatctcaggtacatatcttgaatctttaacggtgattgtgtttt 27482740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 356 - 447
Target Start/End: Original strand, 27463021 - 27463112
Alignment:
Q  356 ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27463021 ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 27463112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 359 - 447
Target Start/End: Original strand, 27483396 - 27483484
Alignment:
Q  359 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27483396 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 27483484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 353 - 447
Target Start/End: Original strand, 18987740 - 18987834
Alignment:
Q  353 agtttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  18987740 agtttcagattaatagtttttatgctgaacaattgttttttgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtg 18987834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 359 - 447
Target Start/End: Original strand, 27471623 - 27471711
Alignment:
Q  359 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27471623 agattaatagtttttatgctgaacaattgatttttatttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 27471711  T

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Target: chr4; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 355 - 447
Target Start/End: Complemental strand, 27520004 - 27519912
Alignment:
Q  355 tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27520004 tttcagattaatagtttttatgctgaacagttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 27519912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 27462505 - 27462660
Alignment:
Q  40 gaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaacaagagca------------ctctcctgactctcttgttg 127  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||            ||||| ||||||| |||||     
T  27462505 gaacaagaacaagaagaagaaccctctcctgatgctgaagatgaaaaagatgaaaaagaacaagaacaagaagaagaaccctctcttgactcttttgttt 27462604  T
Q  128 ctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattg 183  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  27462605 ctgaagatgaaaaagtcatatctcaggtacatatcttgaatattcaactgtgattg 27462660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 27471494 - 27471573
Alignment:
Q  186 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgtt 265  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  27471494 tttttcgtttggtttttaatttactgaatctaggtaagaataaatactcttcctttcatgaattttgtgggcaatatgtt 27471573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27462412 - 27462512
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 100  Q
    ||||||||||||||||||| |  ||||||||||||||  |||||||||   |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  27462412 tgggatgaagttatggaagtcggggaagaaaatgaaaaagaacaagaa---gaagaagagccctctcctgatgctgaagataaaaaagatgaaaaagaac 27462508  T
Q  101 aaga 104  Q
    ||||    
T  27462509 aaga 27462512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 25518897 - 25519091
Alignment:
Q  1 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaagatgaaaaagaac 100  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25518897 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaacaagaagaagagccctctcctgatgctgaagatgaaaaagatgaaaaagaac 25518996  T
Q  101 ------aagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 189  Q
          |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||    
T  25518997 aagaagaagagcactctcttaactcttttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgattgtctttt 25519091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 447
Target Start/End: Original strand, 25520054 - 25520113
Alignment:
Q  388 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 447  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  25520054 atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtg 25520113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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