View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2036_high_13 (Length: 232)
Name: NF2036_high_13
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2036_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 48288414 - 48288509
Alignment:
| Q |
15 |
tagggacataaacaataaatagagaatgagagaacttctaagaaaacttgtttttgcttgataaattaataacaattaaatgtaataaacacaagt |
110 |
Q |
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| T |
48288414 |
tagggacataaagaataaatagagaatgagagaacttctaagaaaacttgtttttgtttgataaattaataacaattaaatgtaataaaaacaagt |
48288509 |
T |
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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 32202524 - 32202596
Alignment:
| Q |
141 |
caacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgcagatgggtttttacaattaaa |
213 |
Q |
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| T |
32202524 |
caacacttgggatcttgtaactttaccaagagggaagaaaacggtggggtgcagatgggtttttacaattaaa |
32202596 |
T |
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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 40455122 - 40455051
Alignment:
| Q |
142 |
aacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgcagatgggtttttacaattaaa |
213 |
Q |
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| T |
40455122 |
aacacttgggatcttgtaactttaccaagagggaagaaaacggtggggtgcagatggatttttacaattaaa |
40455051 |
T |
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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 39744289 - 39744357
Alignment:
| Q |
141 |
caacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgcagatgggtttttacaat |
209 |
Q |
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| T |
39744289 |
caacacttgggatcttgtgactttaccaagtgggaagaaaccagtggggtgcaaatgggtttttacaat |
39744357 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 56391170 - 56391102
Alignment:
| Q |
141 |
caacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgcagatgggtttttacaat |
209 |
Q |
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| T |
56391170 |
caacacttgggatcttgtgactttaccaagtgggaagaaaccagtggggtgcaaatgggtttttacaat |
56391102 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 27515413 - 27515345
Alignment:
| Q |
141 |
caacacttgggatcttgtaactttaccaagagggaagaaaacggtagggtgcagatgggtttttacaat |
209 |
Q |
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| T |
27515413 |
caacacttgggatattgtgactttaccaagtgggaagaaaccagtggggtgcaaatgggtttttacaat |
27515345 |
T |
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