View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2036_high_3 (Length: 375)
Name: NF2036_high_3
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2036_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 41709347 - 41709018
Alignment:
| Q |
20 |
atgggtgctgtcaaaatgttgacaagtgaactaagtttaataatagtggtagtacttgtcagtttttcttaataaacaagccaccttaaagtgtctatac |
119 |
Q |
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| T |
41709347 |
atgggtgctgtcaaaatgttgacaagtgaactaagtttaataatagtggtagtacttgtcagtttttcttaatacacaagccaccttaaagtgtctatac |
41709248 |
T |
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| Q |
120 |
actctcaatttctaagcacattgcagcctgtgttataagaaacatggggcataactattgaagaaaacaataatctgctttaaactgtgttgcattttaa |
219 |
Q |
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| T |
41709247 |
actctcaatttctaagcacattgcagcctgtgttataagaaacatggggcataactattgaagaaaacaataatctgctttaaattgtgttgcattttaa |
41709148 |
T |
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| Q |
220 |
gctatctccagaatcttctgctcctgcagaagaaattaactttgaggaaaactggattaaaatcaatcattgcatctgtctcagtcatattgaattacat |
319 |
Q |
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| T |
41709147 |
gctatctcca----------------cagaagaaattaactttgaggaaaactggattaaaatcaatcattgcatctgtctcagtcatattgaattacat |
41709064 |
T |
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| Q |
320 |
cactggaaatttatcattgcgaatattatttaaaacgccatctgtg |
365 |
Q |
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| T |
41709063 |
cactggaaatttatcattgcgaatattatttaaaacgccatctgtg |
41709018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 14112421 - 14112498
Alignment:
| Q |
285 |
atcattgcatctgtctcagtcatattgaattacatcactggaaatttatcattgcgaatattatttaaaacgccatct |
362 |
Q |
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| T |
14112421 |
atcattgcatctgtcttagtcatattgaattacatcactggaaatttatcattgcgaatactatttaaaacgcaatct |
14112498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 14111755 - 14111806
Alignment:
| Q |
207 |
tgttgcattttaagctatctccagaatcttctgctcctgcagaagaaattaa |
258 |
Q |
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| T |
14111755 |
tgttgcattttaagctatctccataatcttttgctcctccagaagaagttaa |
14111806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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