View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2036_high_5 (Length: 350)
Name: NF2036_high_5
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2036_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 4112612 - 4112295
Alignment:
| Q |
16 |
ataaaaagaaagtgtgcggggagcttgtttcatccttctacttgtaaacctgtttcgatgaaagagacgagcacaggcgtgctcagagggattgatgtgg |
115 |
Q |
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| T |
4112612 |
ataaaaagaaagtgtgtggggagcttgtttcatccttctacttgtaaacctgtttcggtgaaagagaggagcacaggcgtgctcagagggattgatttgg |
4112513 |
T |
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| Q |
116 |
tgtttgagaccttcataccggcagcacctgtagggttttatacatagatggtcaagtgtgaggtgaagatcacgtgccgtggctgggaagaaggtaaaga |
215 |
Q |
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| T |
4112512 |
tgtttgagaccttcataccggcagcacctgtagggttttatacagagatggtcaagtgtgaggtgaagatcacgt-ccgtggctgggaagaaggtaaaga |
4112414 |
T |
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| Q |
216 |
agataggttctacatggatataattaactttacaatgaatggaaaacaattgacttcgtggtatggtagcttaatcatctccaattttattgaaaatggg |
315 |
Q |
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| T |
4112413 |
agataggttctacatggatataattaactttacaatgaatggaaaacaattgacttcgtggtatggtagcttaatcatctccaattttattgaaaatggg |
4112314 |
T |
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| Q |
316 |
gtgaggaagatcaagaaac |
334 |
Q |
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| T |
4112313 |
gtgaggaagatcaagaaac |
4112295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 28 - 334
Target Start/End: Original strand, 4382681 - 4382999
Alignment:
| Q |
28 |
tgtgcggggagcttgtttcatccttctacttgtaaacctgtttcgatgaaagagacgagcacaggcgtgctcagagg----ga--ttgatgtggtgtttg |
121 |
Q |
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| T |
4382681 |
tgtgcggggagcttgtttcatccttctacttgtaaacctgtttcggtgaaagagacgagaatacgcttgcccataagtgttgaagttgaagtggtgtttg |
4382780 |
T |
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| Q |
122 |
agaccttcataccggcagcacctgtagggttttatacatagatggtcaagtgtgaggtgaagatcacgtgccgtggctgggaagaaggtaaagaagatag |
221 |
Q |
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| T |
4382781 |
agaccttcataccggcg---cctgtagggttttatacagagatggtcaagtgtgaggtgaagatcacgtgctgcggctgggaagaaggtgatgaagagaa |
4382877 |
T |
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| Q |
222 |
gttctacatggatataattaactttaca---------atgaatggaaaacaattgacttcgtggtatggtagcttaatcatctccaattttattgaaaat |
312 |
Q |
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|||||| ||||||| |||| | |||||| ||||||||| |||||||||| | | |||||| |||||||||||||||| |||||||||| |
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| T |
4382878 |
gttctatatggatacaattgaatttacaatggatgatatgaatggagaacaattgacacggaaggatggtaacttaatcatctccaatgctattgaaaat |
4382977 |
T |
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| Q |
313 |
ggggtgaggaagatcaagaaac |
334 |
Q |
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|||| |||||||||||| |||| |
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| T |
4382978 |
ggggagaggaagatcaacaaac |
4382999 |
T |
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