View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2036_high_6 (Length: 335)
Name: NF2036_high_6
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2036_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 48604222 - 48604437
Alignment:
| Q |
1 |
tatagcacaaatatggtaaagtaagacatcacaaagcctattccaaatccatgcaaaaatatattgctcctttagtattccaaacaaaaatggaaagaaa |
100 |
Q |
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| T |
48604222 |
tatagcacaaatatggtaaagtaagacatcacaaagcctattccaaatccatgcaaaaatatattgctcctttagtattccaaacaaaaatggaaagaaa |
48604321 |
T |
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| Q |
101 |
acaaacttttggtattttttccaacccctctctcaaaaaccatataatatttttcacttggttatcctctcatttatgtagcccaatgtgtgaatatcat |
200 |
Q |
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| T |
48604322 |
acaaacttttggtattttttccaacccctctctcaaaaaccatataatatttttcacttggttatcctctcatttatatagcccaatgtgtgaatatcat |
48604421 |
T |
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| Q |
201 |
aatgatacacaggtta |
216 |
Q |
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|||||||||||||||| |
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| T |
48604422 |
aatgatacacaggtta |
48604437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 53157584 - 53157699
Alignment:
| Q |
61 |
atattgctcctttagtattccaaacaaaaatggaaagaaaacaaacttttggtattttttccaacccctctctcaaaaaccatataatatttttcacttg |
160 |
Q |
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| T |
53157584 |
atattgttcatttagtgttccatgcaaaaatggaacgaaaacaaagttttgaaattttttccaatccctctgtcaagaagcataaaatctctttcactcg |
53157683 |
T |
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| Q |
161 |
gttatcctctcattta |
176 |
Q |
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| T |
53157684 |
gttatcatgtcattta |
53157699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 7370728 - 7370581
Alignment:
| Q |
61 |
atattgctcctttagtattccaaacaaaaatggaaagaaaacaaacttttggtattttttccaacccctctctcaaaaaccatataatatttttcacttg |
160 |
Q |
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|||||| || |||||| ||||| ||||||||||| ||||||||| ||||| ||||||| ||| | |||| |||| || |||| ||| | ||||||| | |
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| T |
7370728 |
atattgttcatttagtgttccatgcaaaaatggaacgaaaacaaagttttgaaatttttttcaatctctctgtcaagaagcataaaatctctttcactcg |
7370629 |
T |
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| Q |
161 |
gttatcctctcatttatgtagcccaatgtgtgaatatcataatgatac |
208 |
Q |
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| T |
7370628 |
gttatcatgtcatttacatgacccaacgtgaaaatatcataatgatac |
7370581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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